Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1046 ATGTCACAGAGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATGAGTTGGTGGATGATCGTGCAACGGACGACGTGATTTCGTGGAGTGAGAGTGGCAACACTTTTGTGGTGTGGAAGCATGCCGATTTCGCTAAGGATTTGCTTCCCAATTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGCGGCGACGACATGGGATCTTCCTCCACCTCTTCACCTGATTCGAAGAACCCAGGATCTGTGGAAACAACAACATAACAACAACAACAACTCCTCCTCCTCATCAGTGCGCGAATTTATCGAGCGAGAACGAGAAATTGAAGAAGGACAACGAGACGCTAAATTGCGAGCTGGCACGTGCGAAGAGCAGTGCGATGAGTTGGTGGCTTTCTTGAGGGACTGCCTTAAGGTGTGTCCTGATCAGATCAACCGCATCATGAGGCAAGGAAAATGCGGGTCCACCCGTGATCCGGTGCAATCTGATGACACTCTAGTTGATGATGACGACAAACAAGTTGGTGAGGCCGCTGGACCCAGCACTTTGAAATTGTTTGGTGTTTGGTTGAAAGAGGAGAAGCCTAACAACAACCACAAGAGAGGGCGCCAAGGCCCAATGGGCTTTGATGGGCCTCCTGCAAAGGAGATGAAGAAGACTACTACTACAACTAATAGTAATAGTGTTGTTGACTTTGGTGGTTCCAATGTTAAGGTGATGATGAAGAGCAGCAAGGTCTGTAGCTGA 765 0.4902 MSQRSVPAPFLTKTYELVDDRATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYAATTWDLPPPLHLIRRTQDLWKQQHNNNNNSSSSSVREFIEREREIEEGQRDAKLRAGTCEEQCDELVAFLRDCLKVCPDQINRIMRQGKCGSTRDPVQSDDTLVDDDDKQVGEAAGPSTLKLFGVWLKEEKPNNNHKRGRQGPMGFDGPPAKEMKKTTTTTNSNSVVDFGGSNVKVMMKSSKVCS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1046 254 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 68 IPR027725 -
Amo05g1046 254 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 129 228 IPR027725 -
Amo05g1046 254 MobiDBLite consensus disorder prediction 200 235 - -
Amo05g1046 254 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g1046 254 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g1046 254 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g1046 254 Gene3D - 2 113 IPR036388 -
Amo05g1046 254 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 68 - -
Amo05g1046 254 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 129 228 - -
Amo05g1046 254 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Amo05g1046 254 MobiDBLite consensus disorder prediction 158 183 - -
Amo05g1046 254 SMART hsfneu3 6 156 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g1046 254 Pfam HSF-type DNA-binding 10 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1046 Amo-Chr5 13735288 13737316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1046 2 69 HSF AT4G36990 77.941 2.20e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo05g1046 HSF_DNA-bind 7.3e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1046 K09419 - cit:102622704 170.244