Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1017 ATGCGGTGGTTACCATCCAATATATTCACCCCTCCTCATCCTCAGTCCTCCTCTTCTTCTACTTCACATTCTCCTTCTTCTTCGCTTTCATCTTCGCCGTCCAATCCTCCACCACCTGCTTTGTCAGCATTTCCATCCAGTGGCCGAACGCTGCAGACATCCACGTCCACTTCCTCCCTAACGGACCTTCTCCACCCGAGGAAGAAACCTTCCCAGGACTGGACGCGCCGCGCCTGGATCTTCGGATGCGGGATAAGGCCCTCACAAGATGATGACCTGGACGACGACGACTCCGACGCCGTTGTTCCCATGGCTCGTTCCAAAAGCATCAACGACCGCACCTATACACGATCCCAAACCTCATCTTCCACTTCCTCCGCGATTACTGTTGCTCCTCAGCCCTTGCCCTTGCCGGCGGAGCTCTCCTTCCACCGCGGATACCGCCATAGCTCCGTTGAACGACGTTCGCCATCTCCAAAGCGCCACGCCATCGGAAACAACTTTTTCTCCTCCTCCTACAAAGGCCTTGACGAACGCGAACTTCGAGTCGATGCCCTAATCATCGATTCTGTCCCCGTCGCCAATCCCTATCCTCCCATGCGAAGTGTATTTGCGAGCGCAAGAAACAGCAATGATTCGATGGAAAGAAGAGTTCCAGGTGTAGGACCACAAGAAAACGGTGGTTATGGAGGAGGAGATAACAACCAGAGGATGAGCGTGTCATCGTCAAAGAGTGCTCCAGGTAGCCTCTTTGAAAGCCCAACAATAAGTCCACAGAACATGAGAAACGATGACTTTGTTCCGTACCAGTACACGCCACCAAAACATAACCATTTCTGGTCTGCACCTGAGATCATAGGAGGAGGAGGAGGAGCATTCTTTGATTTGTCTCCAAAGGGGATGGATGCTAACAGTAATCATTCTCCTCACCACAGTCCAAAGGGAACCTTGACCCCACGCCATGGCAACTCCAAAAGCCCAACAAGACCTTCTTCCCCCATACAGACCATGTCCATTGACAACTTCAAACCTCAAGCTAGCTTTCGCCGCGATGTTATTATTGGCCCTATCAACAATGTTCATCCCTTACCCTTGCCTCCTCCCACGGCCTTGACTTCACCTACTGCTGCTCATGCACAGTCCCAAGCTGGCAGAAATGAATCCTGTTCAATGCAGAGCCAATGGCAAAAGGGAAAACTCATTGGTCGAGGTACCTTTGGAAGCGTCTATGTCGCTACCAATAGAGAAACTGGAGCATTGTGCGCAATGAAAGAAGTAGAAATATTTGCTGATGATCCAAAATCTAAAGAGTGTATAAAACAGTTAGAGCAGGAGATTAAAATTCTTAGTAACCTGAAGCATCCAAACATTGTGCAATATTATGGTAGTGAAATAGTTGGAGACAAGTTTTACATTTATCTGGAATATGTCTATCCAGGTTCAATAAACAAATACGTCCGGGAACATTGTGGTGCAGTAACGGAATCCGTTGTTAGGAATTTCACTCGCCATATTCTTTCAGGGCTAGCTTACTTGCATAGCACGAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGTTAGTTGATTCTACTGGAGTTGTCAAGCTCGCTGACTTTGGGATGTCTAAACATCTAACTGGGCATGCTGCTGATCTTTCTTTGAAGGGAAGCCCATACTGGATGGCGCCAGAGCTTATGCATGCAGTTATGCAAAGAGATAACAACTCTGATCTAGCTTTAGCTGTTGATATTTGGAGTTTGGGTTGCACGATTATTGAAATGTTCACAGGGAAGCCTCCTTGGAGCGAATACGAAGGAGCGGCAGCTATGTTTAAGGTTTTGAGGGATATACCTCCTATACCTGAACAATTGTCATCAGAGGGAAAAGATTTCCTAAGACGTTGCTTCAGAAGAAATCCAGCAGAAAGACCAAATGCATTAATGTTGTTAGATCATCGATTTGTGAAGCACTTCTAA 1980 0.4737 MRWLPSNIFTPPHPQSSSSSTSHSPSSSLSSSPSNPPPPALSAFPSSGRTLQTSTSTSSLTDLLHPRKKPSQDWTRRAWIFGCGIRPSQDDDLDDDDSDAVVPMARSKSINDRTYTRSQTSSSTSSAITVAPQPLPLPAELSFHRGYRHSSVERRSPSPKRHAIGNNFFSSSYKGLDERELRVDALIIDSVPVANPYPPMRSVFASARNSNDSMERRVPGVGPQENGGYGGGDNNQRMSVSSSKSAPGSLFESPTISPQNMRNDDFVPYQYTPPKHNHFWSAPEIIGGGGGAFFDLSPKGMDANSNHSPHHSPKGTLTPRHGNSKSPTRPSSPIQTMSIDNFKPQASFRRDVIIGPINNVHPLPLPPPTALTSPTAAHAQSQAGRNESCSMQSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFADDPKSKECIKQLEQEIKILSNLKHPNIVQYYGSEIVGDKFYIYLEYVYPGSINKYVREHCGAVTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSTGVVKLADFGMSKHLTGHAADLSLKGSPYWMAPELMHAVMQRDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVLRDIPPIPEQLSSEGKDFLRRCFRRNPAERPNALMLLDHRFVKHF* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1017 659 MobiDBLite consensus disorder prediction 291 338 - -
Amo05g1017 659 SMART serkin_6 395 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1017 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 658 - -
Amo05g1017 659 MobiDBLite consensus disorder prediction 373 388 - -
Amo05g1017 659 Gene3D Transferase(Phosphotransferase) domain 1 391 659 - -
Amo05g1017 659 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Amo05g1017 659 MobiDBLite consensus disorder prediction 368 388 - -
Amo05g1017 659 MobiDBLite consensus disorder prediction 45 65 - -
Amo05g1017 659 MobiDBLite consensus disorder prediction 301 338 - -
Amo05g1017 659 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 658 - -
Amo05g1017 659 MobiDBLite consensus disorder prediction 9 30 - -
Amo05g1017 659 SUPERFAMILY Protein kinase-like (PK-like) 390 657 IPR011009 -
Amo05g1017 659 MobiDBLite consensus disorder prediction 1 69 - -
Amo05g1017 659 MobiDBLite consensus disorder prediction 229 264 - -
Amo05g1017 659 ProSiteProfiles Protein kinase domain profile. 395 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1017 659 MobiDBLite consensus disorder prediction 208 264 - -
Amo05g1017 659 Pfam Protein kinase domain 396 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1017 Amo-Chr5 13329598 13332805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1017 170 658 MAP Kinase Kinase Kinase AT5G66850 57.926 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo05g1017 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1017 - - cam:101502514 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1017 05 13329598 13332805 Amo01g0022 01 781238 785960 PCT
Amo05g1017 05 13329598 13332805 Amo11g0713 11 14334333 14341730 PCT
Amo01g0022 01 781238 785960 Amo05g1017 05 13329598 13332805 PCT
Amo11g0713 11 14334333 14341730 Amo05g1017 05 13329598 13332805 PCT