Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1013 ATGGAGCTGAGCTTGGATTTGAGTTTGTCCTTTGTCCCAAAGACCATATCAATGTTCCTGGGCGATGTTTCTCGGAGCACACAAATCTCTGACAAATTGGCCATGCTTGATGATTTCCTCAACCGATTGGAGGATGAGATGACTAAGATCCACGCCTTCAAACGTGAGCTTCCCCTTTGCATGCTCCTCGTCACCGATGCTATAACAAGATTGAAGGAGGAAAAGCTTCGCTGTATGGGAATGCAAGATCCACAACCTCTCACCACTCAAGAACCACATCATAATAATAACAACTGGATGACTTCACTTCAGCTATGGAGCACTCAAACCAAATCGAGGTGTGAAGAAGATTGTTCTGTGCCAGAGAACCCAATCAAGAGAAGGGAGAACAAGAACAGAAGTGGAGGAGGAGGAGGAGTTGCATTGTTGAATGGGAACTCAAAGGAGGTTTCGAAAGTTCCTAGCTTTAGTTTGATGACTACTACTCCAGCACCTGAACTGAAAAGTAGCAGTTCCAAGAGTAATTCTTCTTCTCTGTTCATGAATCGTGTTGAGATTCAAGCCCAACAATCTCAGAATCCTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCACCGGCGTTTCGTCAATGCTCTCCAACAACTTGGAGGAGCACAAGTGGCCACTCCTAAGCAGATAAGGGAACTGATGCAGGTGGAAAACCTAACAAACGATGAAGTCAAAAGTCACTTACAAAAGTACAGACTTCATGTTAGAAAATTCCCAGTTTCATCTTCAGCTGAGCATGATGCTAATAATAATAATATTGATGATGATGATGAGGATGATCTATGGGAAATGAAGAAGAAAGATCAATGTGGAAAAGGGAACAAAAATTCATCATCACAATCACAATCTGGTTCACCACAGGGTCCTCTACTATTAGCAGGTTCGGTTAAGGGACTCTCAAGCATGGATGCAGATGATGAGCACTCAGATTGCCGCAATTGGAAAGCTGCTATTCACCACCAACCGCCAGAATCTGATAATCACAGCCGCTAA 1044 0.4387 MELSLDLSLSFVPKTISMFLGDVSRSTQISDKLAMLDDFLNRLEDEMTKIHAFKRELPLCMLLVTDAITRLKEEKLRCMGMQDPQPLTTQEPHHNNNNWMTSLQLWSTQTKSRCEEDCSVPENPIKRRENKNRSGGGGGVALLNGNSKEVSKVPSFSLMTTTPAPELKSSSSKSNSSSLFMNRVEIQAQQSQNPRKQRRCWSPELHRRFVNALQQLGGAQVATPKQIRELMQVENLTNDEVKSHLQKYRLHVRKFPVSSSAEHDANNNNIDDDDEDDLWEMKKKDQCGKGNKNSSSQSQSGSPQGPLLLAGSVKGLSSMDADDEHSDCRNWKAAIHHQPPESDNHSR* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1013 347 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 336 - -
Amo05g1013 347 MobiDBLite consensus disorder prediction 117 146 - -
Amo05g1013 347 MobiDBLite consensus disorder prediction 318 347 - -
Amo05g1013 347 Gene3D - 195 252 - -
Amo05g1013 347 MobiDBLite consensus disorder prediction 284 347 - -
Amo05g1013 347 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Amo05g1013 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 251 IPR006447 GO:0003677
Amo05g1013 347 MobiDBLite consensus disorder prediction 117 133 - -
Amo05g1013 347 Pfam Myb-like DNA-binding domain 198 249 IPR001005 -
Amo05g1013 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 IPR044787 GO:0003700|GO:0006355
Amo05g1013 347 MobiDBLite consensus disorder prediction 290 306 - -
Amo05g1013 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 253 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1013 Amo-Chr5 13218167 13220519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1013 1 254 G2-like Transcription Factor Family AT2G03500 40.203 3.63e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo05g1013 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1013 - - gmx:100785723 333.569