Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1008 ATGGATCGAACGCCGGCAGCGGCGGCGGGAGCGGGCGGAGCAGGGATGGAGTTGCCAATCATACACGAAAGTGATCGCTACGATTTCGTCCGTGACATAGGCTCCGGGAATTTCGGTGTGGCGAGGCTCATGAGGGACAAGCTCACCAAGGAGCTTGTTGCTGTTAAGTACATCGAACGCGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATCATCAGGTTTAAAGAGGTCATTTTGACACCTACTCATTTGGCAATCGTAATGGAATATGCATCTGGAGGAGAATTGTTTGAGCGAATCTGCAACGCAGGGCGTTTTACTGAAGACGAGGCTCGGTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGCCATGCAATGCAAGTATGTCACCGGGACTTGAAGTTGGAGAACACTTTGTTGGATGGAACTTCAGCTCTTCATTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACAGTGGGGACTCCAGCATATATTGCTCCGGAAGTGTTGCTAAAGCAAGAGTATGATGGCAAGGTCGCGGATGTTTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGAACCTAAAGACTTCAGGAAGACAATTCAGAGGGTCCTCAGCGTCCAGTACTCTATCCCAGACTTTGTTCAAGTATCTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCTGAGAGGATCACCATTCCTGAAATCTTGAAAAATGAATGGTTTCTGAAGAATCTTCCGGCAGAGTTGATTGATGAAAAAATTATGGGTAGCCAATTTGAAGAGCCAGATCAACCCATGCAGAGCATTGATGAGATCATGCAGATAATTTCAGAAGCTACAATACCACCGGTTGGGGCACATACGTTAGACCATTTTATGATGGATGATAACATCGATGTGGATGATGACATGGATGACTTGGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTATATGCTATATAA 1104 0.4447 MDRTPAAAAGAGGAGMELPIIHESDRYDFVRDIGSGNFGVARLMRDKLTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGTSALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKVADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDFVQVSPECRHLISRIFVFDPAERITIPEILKNEWFLKNLPAELIDEKIMGSQFEEPDQPMQSIDEIMQIISEATIPPVGAHTLDHFMMDDNIDVDDDMDDLDSDFELDVDSSGEIVYAI* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1008 367 PANTHER SERINE/THREONINE KINASE 18 361 - -
Amo05g1008 367 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1008 367 SUPERFAMILY Protein kinase-like (PK-like) 21 324 IPR011009 -
Amo05g1008 367 Gene3D Transferase(Phosphotransferase) domain 1 103 290 - -
Amo05g1008 367 Gene3D Phosphorylase Kinase; domain 1 6 102 - -
Amo05g1008 367 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Amo05g1008 367 Pfam Protein kinase domain 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1008 367 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 18 361 - -
Amo05g1008 367 ProSiteProfiles Protein kinase domain profile. 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g1008 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1008 Amo-Chr5 13156413 13161059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1008 26 294 CBL-interacting serine-threonine protein kinases AT5G25110 44.366 8.20e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo05g1008 Pkinase 3.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1008 K14498 - gmx:100783967 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0034 01 908621 915540 Amo05g1008 05 13156413 13161059 PCT
Amo11g0706 11 14118457 14124107 Amo05g1008 05 13156413 13161059 PCT