Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1007 ATGGCAGATCTGTTCAGTGGAGGTGCCGTTGGAGCGGTTATGGGAGAGCTTCTTCGAGCAGTAATTGAAACCATAAACAAAGGTCGACAGTTCAAGCCAACACTTGAAACCAACATACAAACCTTGAACGACATAGCACCACTGGTTGACCAGATGATGGAATACAACGACAAGTTAGATCGACCAAGACAAGAGATCCAGAGGCTTCAGAGTCGCGTACGTCAAGGACAAGAACTTGCACGAAAGTGCTCCAGAAAGTTAAGTCGCCGGAAGTTTCTTTCATTCCCTTACTACCAGGGGAAGCTTAAGTCCGAGGACCAGTCACTTCAAAGGCACTTGTCCTTTGATGTTCAGGTTCAGAATGCGAGGAACTTGATGGAGGTTCTTTTGAAGGTTGAGGAGATTTTGAACATTCTTGGAAAACAAGATTTTGCTAAGTTCAGTGGGAGCCAGATACAGGGTTTGAGTGGTGCTCCTGAAGAACCCAAGTGTATGGGGATGGATGAGCATTTGAGCAGGTTGAGGATTGAGCTTCTCAAGGATGATGTCAGTGTTCTTGTTTTGACTGGTCTGGGAGGTTCTGGAAAGAGCACTCTTGCTAAAAAGCTCTGCTGGGACCCACATGTTAAAGGCAAGTTCGGGGGGAATATCTTCTTTGTGACCTTCTCAGAAACACCAAACTTGAAGAACATTGTAAGGACATTATTTGAGCACTGCGGATGTAAGGTGCCCGAGTTTCAGAGTGATGAAGACGCCATCAACAAATTGGGAATTTTGTTGAGGCTTGTTGGGAGAAGCCCAATACTATTAGTCCTGGATGATGTTTGGCAGAGCTCAGAGGCACTTGTTGACAAGTTCAGATTTCAGATACCAGATTATAAGATTTTGGTGACTTCAAGGGTTGCTTTTCAAAGATTTGGCACCCCATGGCCGTTGGAACCCCTTGATCATGATGATGCAGTGTCCCTTTTCCGTCACTCGGCTCAACTTAATAGTAAATGCTCCTACATGCCAGATGATAATCTTGTCAATGAGATAGTGAAAGGTTGTAAGGGTTCACCATTGGCACTTGAAGTGATTGGTGGATCACTGTGTCAGCAGCCTTTTGAGGTGTGGCAAGATATGAAAGAATGGTTAGAAAAGCAGTCGATTTTGGAGTCGGGTAATACAGATTTGCTTTCGCGGCTCCAACAAAGTTTAGATATGTTGGAAGATAAGTTCTCAGTTAGTGAGAAGGAGTGCTTCATGGATCTAGGCCTTTTTCCTGAAGACCAAAGGATCCCTGTTGCAATCCTGATTGATATGTGGGCAGAACTGTATAACTTTGATGACAATGGAAGGAAAGCAATGACCATCATCCATGATTTAACCACCAGGAACTTGATTAAGCTCATAGTAACAAAGAAAATTGCAAAGGACACAGACATGTACTACAATAACCACTTTGTCTTGCTACATGATCTCCTCAGAAAGCTGGCAATCCATCAGAGTGAGCAGGAACAAATTGAACAGAGAAAGAAACTAATAATTGAGCTAAATGGAGATGATCATCCTGAATGGTGGGTAAGGCAAAACCAGCAAGGAATATTCAGCCGCCTTTTGTCACTGTCATTCTTACCTGGAAGATTGATAGAACAAAAGCAGCTAAAGGTTGCTGCCAGAGTATTGTCTATATCAACTGACGAGAATTTTGCTTCGGATTGGTGCGACATGACAGCTGATGAAGCCGAGGTTATAGTCTTAAACATTCGATCTAGCCAGTACAGCCTGCCACAGTTCATGGAGAAAATGAACAAACTTAAAGTTCTAATAGTCACAAATTACGGCTTCCATCTTTCTGGACTAAAAGATTTTGAGATACTGAGTGCTTTGTCTAACTTGAGAAGAATCAGATTGGAGAAAGTTTCAGTTCCTTCTTTATGCATACTGAAGAGTCTGCAAAAACTATCGCTTCATATGTGCAACACAAGCCAGGCTTTTGGGAACAGTTCTATCCCAATCTCAGAATCCATGCCAAATCTAGTGGAGTTGAGCATTGACTATTGCAAAGATCTGGAGAAATTGCCAGAGGGGGTATGCAACATTACCCCACTAAAGAAGCTTAGCATCACCAACTGTCACAAGCTTTCAGCACTTCCTAAAGACACAGCAAATCTGAAGAATTTGGAAGTGCTAAGGCTAAGTTCATGCTCCGATTTGGAAGAGATGCCAGATGGGATTGGACGACTGTGTAACCTGCGCTGTCTCGACATATCTGACTGTGTAAGTCTATCCAAATTGCCAGAGGACATTGGAGATCTGCAGAATCTTGAGAAACTCTACATGAAGGGTTGTTCAGGGCTAAGTGAGGTGCCATACTCAGTCATGAACTTTGAGAATGCAAAACATCAAGTATTTGTGTTATGTGATGAGGAGAGGGCTCAATTATGGGAAAATGTCCCCTCAACTCCCAATTTGAAGATAGAGACAGCTAAACATTTTATTCTTGATGTTCGTCAGCATCTAAAAATGAAGAATTTGTCAACTATTCATGAACTGTGTAGATGTTTAGCAGAAACAAAAAAATCAAAAGTGTATTACTTGATTGATAAATTGATTCCTACCACAGAGCAATCATTTTCAGCAATGAAAATAATAAAGACAAGGTTAAGAAACAAGATGGAGGACGACTTTCTTGCGGATAGTTTGGTTATTTACATTGAGAAAGAAATTGTTGAAAAGTTTAGTTCTGATTCAATTATTGAATATTTTAATGTGGCATCCGGCTGTTCACAACAGTGTTCCGTTAATGCGGTCCAAACATTAACGACAAAACATTTATGTGATGATTCTGAGTTGGCTTATACTCCCGGAGTCTTGGTTGCATTTTTGTCTTCGTTAACTGTAGACATGATTATACCCTATTGTTGCTTTGACAAAGAGGTTGTTGTTGATGATGTTATTATGCGTGTCTGGTGGAGTAATTCATGCTCT 2973 0.4147 MADLFSGGAVGAVMGELLRAVIETINKGRQFKPTLETNIQTLNDIAPLVDQMMEYNDKLDRPRQEIQRLQSRVRQGQELARKCSRKLSRRKFLSFPYYQGKLKSEDQSLQRHLSFDVQVQNARNLMEVLLKVEEILNILGKQDFAKFSGSQIQGLSGAPEEPKCMGMDEHLSRLRIELLKDDVSVLVLTGLGGSGKSTLAKKLCWDPHVKGKFGGNIFFVTFSETPNLKNIVRTLFEHCGCKVPEFQSDEDAINKLGILLRLVGRSPILLVLDDVWQSSEALVDKFRFQIPDYKILVTSRVAFQRFGTPWPLEPLDHDDAVSLFRHSAQLNSKCSYMPDDNLVNEIVKGCKGSPLALEVIGGSLCQQPFEVWQDMKEWLEKQSILESGNTDLLSRLQQSLDMLEDKFSVSEKECFMDLGLFPEDQRIPVAILIDMWAELYNFDDNGRKAMTIIHDLTTRNLIKLIVTKKIAKDTDMYYNNHFVLLHDLLRKLAIHQSEQEQIEQRKKLIIELNGDDHPEWWVRQNQQGIFSRLLSLSFLPGRLIEQKQLKVAARVLSISTDENFASDWCDMTADEAEVIVLNIRSSQYSLPQFMEKMNKLKVLIVTNYGFHLSGLKDFEILSALSNLRRIRLEKVSVPSLCILKSLQKLSLHMCNTSQAFGNSSIPISESMPNLVELSIDYCKDLEKLPEGVCNITPLKKLSITNCHKLSALPKDTANLKNLEVLRLSSCSDLEEMPDGIGRLCNLRCLDISDCVSLSKLPEDIGDLQNLEKLYMKGCSGLSEVPYSVMNFENAKHQVFVLCDEERAQLWENVPSTPNLKIETAKHFILDVRQHLKMKNLSTIHELCRCLAETKKSKVYYLIDKLIPTTEQSFSAMKIIKTRLRNKMEDDFLADSLVIYIEKEIVEKFSSDSIIEYFNVASGCSQQCSVNAVQTLTTKHLCDDSELAYTPGVLVAFLSSLTVDMIIPYCCFDKEVVVDDVIMRVWWSNSCS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1007 991 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 2 134 IPR008808 -
Amo05g1007 991 Pfam NB-ARC domain 169 400 IPR002182 GO:0043531
Amo05g1007 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 418 IPR027417 -
Amo05g1007 991 Coils Coil 52 72 - -
Amo05g1007 991 Coils Coil 485 505 - -
Amo05g1007 991 PRINTS Disease resistance protein signature 262 276 - -
Amo05g1007 991 PRINTS Disease resistance protein signature 350 364 - -
Amo05g1007 991 PRINTS Disease resistance protein signature 185 200 - -
Amo05g1007 991 PRINTS Disease resistance protein signature 717 733 - -
Amo05g1007 991 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Amo05g1007 991 Gene3D - 150 305 IPR027417 -
Amo05g1007 991 Coils Coil 393 413 - -
Amo05g1007 991 Gene3D Ribonuclease Inhibitor 546 809 IPR032675 -
Amo05g1007 991 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 823 IPR039203 GO:0050832
Amo05g1007 991 Gene3D - 399 496 IPR036388 -
Amo05g1007 991 CDD AAA 166 321 - -
Amo05g1007 991 SUPERFAMILY RNI-like 578 785 - -
Amo05g1007 991 Gene3D - 314 398 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1007 Amo-Chr5 13150534 13156266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1007 622 787 WRKY Transcription Factor Family AT4G12020 28.235 8.10e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1007 - - gmx:100792590 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1007 05 13150534 13156266 Amo01g0037 01 968104 972814 PCT
Amo05g1007 05 13150534 13156266 Amo11g0701 11 14057323 14062035 PCT
Amo01g0037 01 968104 972814 Amo05g1007 05 13150534 13156266 PCT
Amo11g0701 11 14057323 14062035 Amo05g1007 05 13150534 13156266 PCT