Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0963 ATGTTTCTTCTTCATCACCACCACACAAGCTTCTTTATCGTGCTCACAATCTTGATGGCTTTGACGAGAGCACAAAACTTGACGAACTGCGATCGCCATTGCGGAGGGAAAACCCTGAACTACCCTTTTGGGTTCTCAGAAGGCTGCGAAGTGAAACTGAACTGTACCGAAGACCAAGTCAAAGTTGGCGGCTTTCTGGTTCAGAACATCACAGCTAGCACCATTTTCATCAGCATACCCGCGAAATGCAACCGCACCATGGGATCTATTAAGCCACTCTTCAATGACAATTTTGCCCCCACGTGGAACAACAGCTTCCTCGTGCAGAACTGCACGGAGGAGCAAGGTGGCTGCGTTATCCCCGCCTCCACCTTCACAGGCGGCCAGGCTGAGGTGGAGAGCTGCGACAGCAGCAGCGGTAACATCAGTTGTTTCACCCCGCAGAGCCAGAAACAGAGAAACAACGTTGTTGTTGGTGATGTTTTGAGTTACGATGAATTGAAAAACACTCGTTGCAAGTTCTTGTTCTCTTCGGTTGCTCTTGGGCAGAGCAAGGAGCTATTATTTCTGCAGTTTCAGGTGGTTGAGTTGGGGTGGTGGATTCAGGGTTCTTGTCATGATTCTGGTTGTTCTCAAAACGCTACCTGTACAGAGGTAACAAATCCTCAGGGGAAAAATAGTTCAGGGTTTCGCTGCCAGTGCCTTCATGGCTTCCAGGGAGATGGTTTCATCAACGGTACCGGTTGCCGGAGAGTTTTAAGTTGCAGTGCATCAACAGTAACATCGGGAGGATGTGGAAAAACAACCAAAATAGGTGTTATTGTTGGAGTGATCACAACTGGAGTTTTGGCCGTGGCTGTTCTTCTGTCTCTTGTATGCTACTGTGCCAGGCGCCGTTCTGCTTGGTTGAGCAAACATACAACAGCAAAGCGCCTCTTGCGTGAAGCTGCAGGCAACTCCAGTGTACCTTTCTACCCTTACAAAGAAATTGAAAGAGCAACAAATTCGTTCTCTGACAAGCAAAGGCTGGGAACTGGGGCTTTTGGTACAGTTTATGCTGGAAAACTTCACAATGATGAGTGGGTTGCTATAAAAAAGATAAGGCACAGAGATACCAACGGCGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCTGTGAGTCATGCTAATCTAGTTCGCCTTCTTGGTTGCTGCATAGAGGAGGGAGAGCAGATCCTTGTTTACGAATATATGCCTAATGGAACACTTTCTCAGCATCTGCAAAGAGAGAGGGGTAAAGGTCTTCCATGGACAATAAGACTTACTATTGCAACTGAAACTGCTAAAGCAATCGCATATCTTCATTCAGCAATTCATCCACCAATTTACCACAGAGACATCAAATCCAGTAATATACTCTTGGATTACAGCTTCAAATCTAAAGTTGCCGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCACATATCTCAACTGCTCCACAAGGGACTCCGGGTTATGTTGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTCTACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCTTGAAAGTGGTTGATTTCGGTCGACAACAAAGTGAGGTCAATTTAGCAGCACTTGCTGTTGATAGGATTAGGAGGGGTGCCATAGATGAGATCATAGATCCCTTCCTTGAACCACATCAAGATGCTTGGACACTCTATTCAATTCATAAGGTGGCTGAGCTTGCATTTAGGTGTCTTGCTTTCCATAGCGACATGAGGCCTAGTATGATGGAAGTGGCAGAGGAGCTAGAACACATCAAGCGCAGTGGATGGGCATCCACCGAGGAAAATATGTGTCTAGCTTCATCAGTTGGGTCTGGAAACTCATCTCCTCGCAGAGGAAGTGACAAGTCACTGGGCGGTATTAAGTTAAATAAAGCAGGGCAAGGGAATGAGATATTGATCGTTACGCAGAAGACCGGAAGCTTTTTGAAATCAATGGAGGCAAAGGACAGCTCTCCTGTATCAGTGCAGGATCCTTGGTCAAGTGGACACAGCTCACCTTCAACAAACAGTTTGTTGGACAATGCAGTTCATTGA 2118 0.4603 MFLLHHHHTSFFIVLTILMALTRAQNLTNCDRHCGGKTLNYPFGFSEGCEVKLNCTEDQVKVGGFLVQNITASTIFISIPAKCNRTMGSIKPLFNDNFAPTWNNSFLVQNCTEEQGGCVIPASTFTGGQAEVESCDSSSGNISCFTPQSQKQRNNVVVGDVLSYDELKNTRCKFLFSSVALGQSKELLFLQFQVVELGWWIQGSCHDSGCSQNATCTEVTNPQGKNSSGFRCQCLHGFQGDGFINGTGCRRVLSCSASTVTSGGCGKTTKIGVIVGVITTGVLAVAVLLSLVCYCARRRSAWLSKHTTAKRLLREAAGNSSVPFYPYKEIERATNSFSDKQRLGTGAFGTVYAGKLHNDEWVAIKKIRHRDTNGVDQVMNEIKLLSSVSHANLVRLLGCCIEEGEQILVYEYMPNGTLSQHLQRERGKGLPWTIRLTIATETAKAIAYLHSAIHPPIYHRDIKSSNILLDYSFKSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFGRQQSEVNLAALAVDRIRRGAIDEIIDPFLEPHQDAWTLYSIHKVAELAFRCLAFHSDMRPSMMEVAEELEHIKRSGWASTEENMCLASSVGSGNSSPRRGSDKSLGGIKLNKAGQGNEILIVTQKTGSFLKSMEAKDSSPVSVQDPWSSGHSSPSTNSLLDNAVH* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0963 705 SUPERFAMILY Protein kinase-like (PK-like) 318 610 IPR011009 -
Amo05g0963 705 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 680 IPR045274 GO:0007166
Amo05g0963 705 SMART serkin_6 337 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0963 705 Pfam Protein kinase domain 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0963 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Amo05g0963 705 ProSiteProfiles Protein kinase domain profile. 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0963 705 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Amo05g0963 705 ProSiteProfiles EGF-like domain profile. 201 244 IPR000742 -
Amo05g0963 705 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Amo05g0963 705 Gene3D Laminin 208 245 - -
Amo05g0963 705 MobiDBLite consensus disorder prediction 672 705 - -
Amo05g0963 705 Gene3D Phosphorylase Kinase; domain 1 289 412 - -
Amo05g0963 705 MobiDBLite consensus disorder prediction 628 648 - -
Amo05g0963 705 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 20 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0963 Amo-Chr5 12736812 12740913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0963 30 702 Receptor kinase-like Gene Family AT2G23450 57.522 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo05g0963 Pkinase 8.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0963 - - gmx:100779130 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0963 05 12736812 12740913 Amo01g0062 01 1566851 1572666 PCT
Amo01g0062 01 1566851 1572666 Amo05g0963 05 12736812 12740913 PCT