Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0951 ATGGAAGTACTTCCCTGTTCTGGTGTTCAATGTACAGGGGAATCTGACCGTCCTCAACAGAGTCCAGGGACAGCCTTTTTATATCAGGGAGAACCTAATTACCCTGAAAATGGTCAACAAGTTAAATTTGGAGACAGTCAACTGAATGAATTGTCACACAAAATGGAAGGGTCTCAGATAGAAAAGCAAGGTGAAGAAAAATGGACTGTCTGTCATTTGTCGACTAATTCGGATGTTCAATGCAGCAGAGATTCAGGTTGTGGCTTTCAGGGGGAAGACCAGAAGGAAGACTCCGCTCTCGATGATCTTGATGATGATTTGATAAATGAACCTTGCTTAACATCTGAAAATTCTCTCTTGGTTGTGGATACGATTGAAAGCGAATCACCAAACAACAGGGAAGGAGATTTATCATTTTCTGAACCCAAGTGGCTAGAGGGGGATGAACCTGTGGCATTATGGGTCAAGTGGAGAGGAAAGTGGCAGACTGGCATCAGATGTGCGAGAGCTGACCGGCCATTATCAACTTTGAGAGCAAAACCAACTCATGGACGGAAGAAATATTTTGTCATATTTTTTCCACACACAAGGAATTATTCTTGGGCAGATATGCTGCTTGTCCGATCAATCGATGAGTTTCCCCATCCTATTGCATATAAGACTCATTGGGTAGGATTAAAAATGGTAAGCGACTTGACTATTGCACGGCGGTTTATAATGCAGAAGCTAGCTATTGGAATGCTGAATATTGTTGATCAGCTTCATCCAAATGCACTGACAGAAACTGCCCGTGATGTGAAGGGCTGGAAGGAATTTGCCATGGGTGCTTCCCATTGTACTGGTTATTCAGAATTTGGAAGAATGCTTCTAAAGCTGCACAATAGCATATTGCAGCCCTACATAAATGCTGATTGGTTACAGCATTCTTCTCACTCTTGGGCTGAAAGATGTCATATTGTGAATAGTGCCGAATCTGTAGAGCTGCTGAAGGAGGAATTGTCTGATTCTATTTTATGGAACGATGTCAACTCTCTTTGGAGGACACCGGCACAACCAATGTTAGGTTCTGACTGGAAATCCTGGAAGCATGATGTAATGAAATGGTTTACAACTTCACCTTCCTTATCTTGCAGCAAAGACACACAGCCACAGACTCCTGATGCTTCGTATGCTGCAAACCTTCAGGTTTCTAGAAAACGGGCCAAACTTGAAGTTCGTCGGGCAGATACACATGCTTCGCAAGCGGAAAGGAAAGATGTGAATCAGTCTGTTGCTCTTGAGACTGACCTTGGGTTCTTTAAGAATCAGGATACATTGAGCCTATTAGCAGCTGAGAATGGTAAACATGAAGATGTTAGGGAGGTATCTGCTGCGAACGATTTAACTAGTAATGTGGCCAATAAATGGAATGAAATTGTAGTTGAGGCTGCCGATTCGGATTGCTTGCATACCAAAGGAATGGAATTAACACCTGTGAGTGAAATGGCTGTTTCAAAATCAGTAGAGCCCGGTAGTAAGAATCGACAATGTATAGCCTATATTGAATCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTATTGTTGTGTACATTTGTCCTCTCGATTTTTGGGCAGCTCGGAAAAAGCTGAGAAGCTGGTTCCAGTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACAAAATGCAAGCACCGAGCCCTACCTGGTTTTCTATTCTGTAAGAAACACAAGCCTCATGATGAAACAGAGATCTCACATTCACCACAAAGTACACTGAAAAGGAAACTTGAAGAAAATTATGCTGGTTCAGTGAACACCTGCAGAGACATTGTGTTGGTAAATTCTGAGAGCCCACTGGAAGTGGAGCCAGTGTCATTCATTGGCGATGATTACTTTCAAAGAAAAAGCAGCTTAGGTGAGAATCCCACACATCCTGATAATTATGATGCAACGAAGGGTCTGCACTGTATTGGTTCTCCTCCCTTTGATGACAAGAATCCATGTAGAGAAGCTCCTAAGCGATATTGCTTGTATTGTGAAAATCACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATCGTATCGAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCGTGGGAGCAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTCTACAGGCTGTTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTTCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATACTAGTGTAGGAGAATTCTTTACAAAGTTGGTTCATAGTGAGAAGGCTAGAATCAAACTAATTTGGGGATTCGGTGATGACTTGGATGTATCTCCTATCATGGAAGAACCACCAGTTTTGCCATCCACAACCACTGATAGCATCGATAATGAAAATGCCATTAAGTGTAAGATATGCTCTGCAGAATTCAGTGATGACCAAGCTCTTGGTAACCATTGGATGGATAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGGGGTTATGCATGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTGTTGGAAACACATGTTCAAGAGCGACACCATGTGCAGTTTGTTGAACAGTGTATGCTTCTACAATGTATTCCTTGTGGTAGTCATTTCGGAAACAGTGAGCAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTAAAGCCATCAAAAGCTCCTGAGCGGCAAACTCTCCCTGCTGGAGCTGGTCAAGATTCTCCAGTAAAACATGTCCAAGGAAACTCTGCTCCTTTGGAGAATAATTCTGAGAATCCGGGTGTCTTGCGGAAGTTCACTTGCAGGTTTTGTGGGTTGAAATTTGATTTGTTACCTGACCTTGGTCGACATCACCAAGCTGCCCATATGGGACCCAATCTAGTTAGCAACCACCCTGCCAAGAAGGGGGTTCGCTACTATGCATATAGATTAAAATCTGGCAGACTTAGCCGTCCTAAATTTAAAAAAGGTTTGGCAGCAGCATCATATAGGATCAGAAACAGGGCTAATGCTAATCTAAAGAGAGGTATCCAAGCAACAAAATCGCTTGGCATGAGGGACATGTCCTTACAACCTCGTGTAACATCATTACAACCTCAGGTGACAACATCCTTACAGCCTCATGTAACTGAAACATCAAAGATTAGTAAATTCGTGGAACATCAGTGCTCGGGAGTTGCAAAAATTTTATTTTCTGAGATTCAGAAGACTAAACCCCGGCCCAACAATCTTGATATTCTATCAATTGCTCGCACTGCTTGCTGCAAAGTTAGTCTTGCAGCCTCACTTGAGGAGAAATTTGGAATTCTACCTAAAAGAATATATTTGAAGGCAGCAAAACTTTGTGCTGAGCATAATATTATTGTAAATTGGCATCATGAGGGGTTTATTTGTCCTAGAGGCTGCAATGGTTTGAAGGATCAAGCATTGCTCTCTCCCTTATCATCTCTTCCTAATAGTTTTGTGAGGCCAAAATCTGTAAATGTATCAGATCATGCAAGTGATGAGTGGGAACTGGATGAATTTCATTGCATCATCAATTCACATGGTCTAAAGTTAGGGTCACTGCAAAAATCTTCAATCTTTTGTGATGATATAAGCTTCGGGAAGGAATCAACTCCTGTGATTTGTGTAGTAGATCAAGAACTTTTGCATTCTATCAATAAGAATGATTCCAATGATCAAGATACTGACTCTGCTATGCCTTGGAAGAGCTTTACCTATGTTACAAAGGCAATGCTTGATCAATCCCTTAGTCTTGATTCGGAGGTAGTTCTCACTAGTCTGCAATTGGGATGTTCCTGCTCATATTCTTCATGCTGTCCTGAAACATGTGACCATGTATACCTTTTTGGTAATGACTATGAGGATGCGAACGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGACGAGAATGGTCGAATAATATTAGAGGTAATACTTTCAATCCGCATTAAAGCTTTATGCATTGACTCAATAATTTTCAACCATCTAAGAACAGATGAACGACAGAACGAATGTGTAAAGTGTTGGCGAGTTCAC 4119 0.4164 MEVLPCSGVQCTGESDRPQQSPGTAFLYQGEPNYPENGQQVKFGDSQLNELSHKMEGSQIEKQGEEKWTVCHLSTNSDVQCSRDSGCGFQGEDQKEDSALDDLDDDLINEPCLTSENSLLVVDTIESESPNNREGDLSFSEPKWLEGDEPVALWVKWRGKWQTGIRCARADRPLSTLRAKPTHGRKKYFVIFFPHTRNYSWADMLLVRSIDEFPHPIAYKTHWVGLKMVSDLTIARRFIMQKLAIGMLNIVDQLHPNALTETARDVKGWKEFAMGASHCTGYSEFGRMLLKLHNSILQPYINADWLQHSSHSWAERCHIVNSAESVELLKEELSDSILWNDVNSLWRTPAQPMLGSDWKSWKHDVMKWFTTSPSLSCSKDTQPQTPDASYAANLQVSRKRAKLEVRRADTHASQAERKDVNQSVALETDLGFFKNQDTLSLLAAENGKHEDVREVSAANDLTSNVANKWNEIVVEAADSDCLHTKGMELTPVSEMAVSKSVEPGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLSSRFLGSSEKAEKLVPVDTPMCEGTTVLGTKCKHRALPGFLFCKKHKPHDETEISHSPQSTLKRKLEENYAGSVNTCRDIVLVNSESPLEVEPVSFIGDDYFQRKSSLGENPTHPDNYDATKGLHCIGSPPFDDKNPCREAPKRYCLYCENHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDTSVGEFFTKLVHSEKARIKLIWGFGDDLDVSPIMEEPPVLPSTTTDSIDNENAIKCKICSAEFSDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSVHPVDLKPSKAPERQTLPAGAGQDSPVKHVQGNSAPLENNSENPGVLRKFTCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNHPAKKGVRYYAYRLKSGRLSRPKFKKGLAAASYRIRNRANANLKRGIQATKSLGMRDMSLQPRVTSLQPQVTTSLQPHVTETSKISKFVEHQCSGVAKILFSEIQKTKPRPNNLDILSIARTACCKVSLAASLEEKFGILPKRIYLKAAKLCAEHNIIVNWHHEGFICPRGCNGLKDQALLSPLSSLPNSFVRPKSVNVSDHASDEWELDEFHCIINSHGLKLGSLQKSSIFCDDISFGKESTPVICVVDQELLHSINKNDSNDQDTDSAMPWKSFTYVTKAMLDQSLSLDSEVVLTSLQLGCSCSYSSCCPETCDHVYLFGNDYEDANDIFGKPMRGRFPYDENGRIILEVILSIRIKALCIDSIIFNHLRTDERQNECVKCWRVH 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0951 1373 ProSiteProfiles Zinc finger C2H2 type domain profile. 850 873 IPR013087 -
Amo05g0951 1373 MobiDBLite consensus disorder prediction 932 947 - -
Amo05g0951 1373 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1337 - -
Amo05g0951 1373 Coils Coil 398 418 - -
Amo05g0951 1373 ProSitePatterns Zinc finger C2H2 type domain signature. 957 978 IPR013087 -
Amo05g0951 1373 Pfam Zinc finger C2H2-type, 3 repeats 852 979 IPR040689 -
Amo05g0951 1373 Gene3D Classic Zinc Finger 803 876 - -
Amo05g0951 1373 MobiDBLite consensus disorder prediction 914 947 - -
Amo05g0951 1373 Gene3D SET domain 1203 1369 IPR046341 -
Amo05g0951 1373 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1337 - -
Amo05g0951 1373 SMART c2h2final6 850 873 IPR013087 -
Amo05g0951 1373 SMART c2h2final6 816 839 IPR013087 -
Amo05g0951 1373 SMART c2h2final6 884 907 IPR013087 -
Amo05g0951 1373 SMART c2h2final6 955 978 IPR013087 -
Amo05g0951 1373 MobiDBLite consensus disorder prediction 1 32 - -
Amo05g0951 1373 ProSitePatterns Zinc finger C2H2 type domain signature. 886 907 IPR013087 -
Amo05g0951 1373 ProSiteProfiles Zinc finger C2H2 type domain profile. 816 844 IPR013087 -
Amo05g0951 1373 ProSitePatterns Zinc finger C2H2 type domain signature. 818 839 IPR013087 -
Amo05g0951 1373 MobiDBLite consensus disorder prediction 12 32 - -
Amo05g0951 1373 ProSiteProfiles Zinc finger C2H2 type domain profile. 955 983 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0951 Amo-Chr5 12597369 12609710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0951 124 1337 C2H2 Transcription Factor Family AT2G23740 48.860 0.0 1119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g0951 zf-C2H2_3rep 1.1e-66 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0951 - - adu:107487826 2720.27