Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0940 ATGGCTTTCTTTCTACCCTCTCTCTCAAGTAGTATTTTTCTTGTATTCATGTTCTCCATCACCAGCATCCCAACTCAATCACAACAGGTTAATGGAACAGACTTTTCATGCCCAGTGGATTCACCTTCTTCCTGTGGAACATATGTGACATACATCGCTAAATCTCCAAACTTCTTGAGCCTTTCTAACATATCTGACATATTTGACACCAGCCCTTTATCCATTGCAAGAGCAAGTAACATAAAGAATGAGGGTGACAAGCTGGTTCCAGGCCAAGTCTTACTGATACCTGTCACTTGTGGTTGCACTCAAAACCAATCTTTCGCCAATATYACCTATGAGCTAAGGCAGGGTGATRTGTACGACWTTGTCTCAAAAACAACATATGAGAATCTCACAAATTGGCGTGCTGTCAACRATTCAAACCCAGATTTGAATCCAGTTCTGCTGCCAGTAGGTGTGAAAGTATTGTTCCCTTTATTCTGCAGGTGCCCTTCTAAGAARCAGTTACARAAAGGGATAGAATATATGATCACCTATGTGTGGCAGAACAATGACAATGTTTCCTCTGTAGCAGCCAAGTTTGGTGCATCGSCRGTGGACATATTGTCCGAAAACAACTAYGGTGGAAACTTCACAGCTGCAACCTATCTTCCGGTTTTRATTCCTGTGACGAAGTTGCCRGTTCTTACTCAACCCGAGSCTTCACATGGAAGAAAGAGAAGCATTCAAATCCCTGTTATAATYAGTATTAGCCTGGGGTTCACCCTTGTTGTTGCTGTTATAGTAATATCAATGGTTTATGCTTATCTTTATCAGAGAAAGAGGACTTTGAATAGGAGAGACTYATCTGCTGGGACAGCAGATAAGCTACTCTCTGGAGTYTCAGGCTACGTGAGTAAGCCAACCGTGTATGAAGCCAATGAGGTTATCAAAGCCACCATGAATCTCAGCGAACAGTGCAAGCTTGGGGGCACAGTTTACAAGGCCAAAATAGAAGGGCAGGTCTTGGCAGTGAAAAAAGTGAATCAAGTAGTTTCTGAGGAGCTGAATATTCTGCAGAAGGTGAATCATGGAAACCTGGTGAAACTGATGGGTGTATCTTCAGACAGTGATGGAAACCATTTCCTGGTTTATGAGTATGCTGATAACGGGTCCCTTGATGRGTGGCTCTTCTCCAAGTTGTCTTTGAAGGCCTCGCTTACATGGTATCAGAGGATTAACATAGCATTGGATGTTGCCATGGGTCTGCAATACTTGCATGAGCACACTTATCCAAGAATAGTCCATAGGGACATCACAACAAGTAACATCCTTCTTGACTCCAACTTCAAGGCCAAGATAGGGAACTTCTCCATGGTCAGAACTACTACRAATCCCATGATTTCCAAGATCGATGTCTTTGCTTTCGGGGTTGTTCTGATTGAGTTGCTTACAGGCAGGAAAGCCATGACAACAAAGGCAGATGGTGAGGTAGTAATGCTGTGGAAGGATATTAGGAAGATGTTTGAAGTGGAAGAYGAAAAGGAAAAGGAGGARTGTCTGAGAAGATGGATGGATCCTAAGCTAGAGTGCCTTTACCCTGTGGATTATGCTCTCAGCTTGGYCACGTTGGCCGCGAATTGCACGGCCGATGTATCATTGTCTAGACCAACCATGGCAGAAGTTGTTCTTGGCCTCTCCCTTCTCACTCAACCATCTCAAGCTGCACTAGAGAGATCATTGACTTCTTCTGCGTTGGAAGCAGAGGTTACTCATGTGGCTACTCCCATAGCAGCACGTTAA 1785 0.4331 MAFFLPSLSSSIFLVFMFSITSIPTQSQQVNGTDFSCPVDSPSSCGTYVTYIAKSPNFLSLSNISDIFDTSPLSIARASNIKNEGDKLVPGQVLLIPVTCGCTQNQSFANITYELRQGDXYDXVSKTTYENLTNWRAVNXSNPDLNPVLLPVGVKVLFPLFCRCPSKKQLQKGIEYMITYVWQNNDNVSSVAAKFGASXVDILSENNYGGNFTAATYLPVLIPVTKLPVLTQPEXSHGRKRSIQIPVIISISLGFTLVVAVIVISMVYAYLYQRKRTLNRRDXSAGTADKLLSGVSGYVSKPTVYEANEVIKATMNLSEQCKLGGTVYKAKIEGQVLAVKKVNQVVSEELNILQKVNHGNLVKLMGVSSDSDGNHFLVYEYADNGSLDXWLFSKLSLKASLTWYQRINIALDVAMGLQYLHEHTYPRIVHRDITTSNILLDSNFKAKIGNFSMVRTTTNPMISKIDVFAFGVVLIELLTGRKAMTTKADGEVVMLWKDIRKMFEVEDEKEKEECLRRWMDPKLECLYPVDYALSLXTLAANCTADVSLSRPTMAEVVLGLSLLTQPSQAALERSLTSSALEAEVTHVATPIAAR* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0940 594 Pfam LysM domain 60 97 IPR018392 -
Amo05g0940 594 Gene3D LysM domain 60 109 IPR036779 -
Amo05g0940 594 ProSitePatterns Tyrosine protein kinases specific active-site signature. 428 440 IPR008266 GO:0004672|GO:0006468
Amo05g0940 594 Gene3D Phosphorylase Kinase; domain 1 293 381 - -
Amo05g0940 594 Pfam Protein tyrosine and serine/threonine kinase 343 458 IPR001245 GO:0004672|GO:0006468
Amo05g0940 594 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 13 594 - -
Amo05g0940 594 Gene3D Transferase(Phosphotransferase) domain 1 382 459 - -
Amo05g0940 594 SUPERFAMILY Protein kinase-like (PK-like) 303 564 IPR011009 -
Amo05g0940 594 ProSiteProfiles Protein kinase domain profile. 285 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0940 594 ProSiteProfiles LysM domain profile. 49 96 IPR018392 -
Amo05g0940 594 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 13 594 - -
Amo05g0940 594 Gene3D Transferase(Phosphotransferase) domain 1 460 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0940 Amo-Chr5 12393963 12395747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0940 79 563 Receptor kinase-like Gene Family AT3G21630 31.413 9.10e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo05g0940 PK_Tyr_Ser-Thr 5.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0940 - - gmx:100301877 800.816