Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0939 ATGCGTCTCTTTTTTCTCTTCATCATCATCATCACCATCACCAACTTGTCTCTGATAAAGGGACAGCAACCTTACATTGGTTTAGGGACAGTAGCATGTCCTCGAAGGGGTAACGCAAAATCAATCCGAGGCTACACTTGCAACGGTTTAAACCACAGTTGCCAAGCTTACCTCACATTCAGATCCCAACCACTCTACAGTTCTGTCTCTACAATCTCTTCTCTGTTAAACTCTGACCCTTCACAACTCGCTCTCATCAACTCCGTTTCTTTAAACGACACCTTCGAACCAAACACGCTTGTCATTGTTCCCGTTAACTGCTCCTGTGCCTCCGAGTATTACCAATCAAACACATCCTATGTTTACCACAATGCTGAAACCTACTTCTTAATTGCCAACAACACCTTCCAAGGACTCACCACGTGTCAAGCTATGATGCACCAGAATGCTAACCTTTCTAACCTATACCCTGGAAGACAACTTGCTGTTCCTCTTAGATGTGCTTGTCCCACAAAGAATCAAACTCTCAAAGGTGTTAGGTACCTCTTGAGTTACCTTGTTGATTGGGGTGATTCTGTTTCTTTCATTAGTCAAATGTTCAACGTCACTACTCAGATCACTCTTGATGCTAATTCCCTTACTATGAGTTCTGTCATCTATCCCTTTACCACTATGCTAGTCCCTCTTCATGATAAGCCCCTCAAACTTCAAGCTTCTTCGCCATCATCTCAACCACCTTCTTCTTCTGATTCTAGTTCAACAGATAAAAGCTCAAAGAAAACATGGGTTTATGTTGTTGTTGGAGTTGTTGGTGGCTTTGCCTTAATATTTGTTACTTGTGCTGTCATTTTCTTCACACACACTCGCAAAACTAAAAGGAATCAAGAGGTTGTTGCAGTTTCTAAGAGTTTTGAGGCAATTGAGAAACCAGAAGGGAAGATAATGGAGCAAGAATCTGGAAAATTGTCAGAGATCATAGCTAGCATGGCTCAATCTTTCAAAGTGTATGATTTTGAGGAACTGCAGCGTGCAACGGACAACTTTAGCACAAGTTGCTTGATCAAAGGATCGGTTTATCGCGGAGTTATCAATGGTGATCTTGCTGCAATCAAGAAGGTAGAAGGAGATATCTCAAAGGAGATTCAAGTTCTGAATAAAGTCAACCATTCCAATGTTATACGCCTCTCCGGTGTCAGCTTCTACCAAGGCCAATGGTATCTTGTTTATGAGTATGCTGCTAATGGAGCCTTGAGTGATTGGATCTACATGGACAACGTTGATGGCGAGTTTCTAAGTTGGAGGCAGAGGATTCAGATTGCTTTGGATGTGGCTACAGGACTTGACTATCTTCACAGCTTCACTTCTCCTTCATATATTCACAAGGATCTCAAGTGTAGCAACATTCTTTTGGACAGTGAGTTAAGGGCAAAGGTTGCAAACTTTAGCCTTGCAAGGTCTGTGGAAGGAGAAAATGGTCAATTTCCAATGACAAGGCATATTGTAGGGACAAGGGGTTACATGGCTCCTGAGTATTTGGAGAATGGTGTTGTATCCACAAAGATTGATGTGTATGCATTTGGAGTTCTGGTGCTAGAAATCCTCACTGGAAAAGAGGTTGCTGAAATCTTGAATGAAGATGACAATAACAATAAGGGKTTTTCAAATGYTTTGAGTRTTATTCTTAGTGAGGAAAGTGGCAAGGAGAGGGTGAAGGAGTTTATGTATGCTTCTCTTCATGGGAATTATCCATCAGAACTTGCTAYGGTTGTGATTGGAATGATTCATAATTGTGTAGAGAAAGAGCCAGAAAATAGACCACAGATGCAGGAGATTGTTGCATCTCTGTCCAGAATATTGAACTCTTCATTGAAYTGGGAAACCTCAGTGAGCATCTCAGCATCCCAAAGCTTTTGA 1914 0.4148 MRLFFLFIIIITITNLSLIKGQQPYIGLGTVACPRRGNAKSIRGYTCNGLNHSCQAYLTFRSQPLYSSVSTISSLLNSDPSQLALINSVSLNDTFEPNTLVIVPVNCSCASEYYQSNTSYVYHNAETYFLIANNTFQGLTTCQAMMHQNANLSNLYPGRQLAVPLRCACPTKNQTLKGVRYLLSYLVDWGDSVSFISQMFNVTTQITLDANSLTMSSVIYPFTTMLVPLHDKPLKLQASSPSSQPPSSSDSSSTDKSSKKTWVYVVVGVVGGFALIFVTCAVIFFTHTRKTKRNQEVVAVSKSFEAIEKPEGKIMEQESGKLSEIIASMAQSFKVYDFEELQRATDNFSTSCLIKGSVYRGVINGDLAAIKKVEGDISKEIQVLNKVNHSNVIRLSGVSFYQGQWYLVYEYAANGALSDWIYMDNVDGEFLSWRQRIQIALDVATGLDYLHSFTSPSYIHKDLKCSNILLDSELRAKVANFSLARSVEGENGQFPMTRHIVGTRGYMAPEYLENGVVSTKIDVYAFGVLVLEILTGKEVAEILNEDDNNNKGFSNXLSXILSEESGKERVKEFMYASLHGNYPSELAXVVIGMIHNCVEKEPENRPQMQEIVASLSRILNSSLNWETSVSISASQSF* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0939 637 SUPERFAMILY Protein kinase-like (PK-like) 329 615 IPR011009 -
Amo05g0939 637 MobiDBLite consensus disorder prediction 236 254 - -
Amo05g0939 637 Pfam LysM domain 189 228 IPR018392 -
Amo05g0939 637 ProSiteProfiles LysM domain profile. 183 227 IPR018392 -
Amo05g0939 637 Pfam Protein kinase domain 366 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0939 637 MobiDBLite consensus disorder prediction 235 254 - -
Amo05g0939 637 Gene3D Phosphorylase Kinase; domain 1 319 411 - -
Amo05g0939 637 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 5 630 - -
Amo05g0939 637 Gene3D Transferase(Phosphotransferase) domain 1 413 633 - -
Amo05g0939 637 SMART serkin_6 348 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0939 637 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 630 - -
Amo05g0939 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Amo05g0939 637 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Amo05g0939 637 ProSiteProfiles Protein kinase domain profile. 327 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0939 Amo-Chr5 12391229 12393685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0939 5 628 Receptor kinase-like Gene Family AT2G23770 43.553 9.60e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo05g0939 Pkinase 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0939 - - gmx:100815842 837.41