Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0938 ATGGCTACTATCCTTTTGGCCATTGTGATTGCCACCCTTTTCACTGCAAACCCTATTTCTTGCGCCAAGCAATCCAAAATAACTGGCATGAAAATGAATGTGATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCATCGATCGCAACTCGCCAACTGCTCCATTGGCTATGCGGGCAAGATGATGAACAACATTGGCAATGACCTCGTCTATTATGAAGTTACTGACCCTAGTGATGACCCCATAAACCCTAAGCCTGGTACCTTGCGATATGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTTAAAAGCGACATGAAAATCACATTGGCCAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCACCAATGTCCACGTTGCTAATAATGCATGCTTCATGATCTTTAAGGCAACGAATGTAATAATCCACAGCATTCGAATCCATCATTGTAAATCACAAGCTCCTGGGTTGGTGGTGGGTCCAAATGGAAAGGTAATTTCATTGGGTCAAGTTGATGGCGATGCAATCAGACTAGTCACTGCCTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCGAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCGGAACATGAAAGTTACCGTTGTCTACAATCATTTTGGACCGAATTGCAACCAACGCATGCCAAGGATCCGTCATGGATATGCACATGTAGCGAACAATCTTTACCAGGGATGGATGCAATATGCTATTGGTGGAAGCAAAGAACCCAGTCTCAAAAGCCAATCTAACCTCTTCATAGCACCCAAATCCGGGAACAAGGAGGTGACATGGAGAAAAGGCAGTAACGAAAATGGGGACAGATGGGAATTCCATTCAGTAGGGGATGTTTTTGAAAATGGAGCGTCTTTCACGGCAACAGAAGGAGGACGTGTGCCAAAACCCAATTATAGTGAGGAACAACGTTTTAAGGTTCTTGATGCTAAGTCTGTTAGATTTTTGACAAAATCCTCTGGCGTACTACGATGCACCAACAAAAAATCTATTTGCTAA 1155 0.4277 MATILLAIVIATLFTANPISCAKQSKITGMKMNVIDQCWRLNPQWRSHRSQLANCSIGYAGKMMNNIGNDLVYYEVTDPSDDPINPKPGTLRYGASMIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGTNVHVANNACFMIFKATNVIIHSIRIHHCKSQAPGLVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRKGSNENGDRWEFHSVGDVFENGASFTATEGGRVPKPNYSEEQRFKVLDAKSVRFLTKSSGVLRCTNKKSIC* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0938 384 Gene3D - 32 376 IPR012334 -
Amo05g0938 384 PANTHER PECTATE LYASE 18-RELATED 10 380 IPR045032 GO:0030570
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Amo05g0938 384 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Amo05g0938 384 SUPERFAMILY Pectin lyase-like 54 374 IPR011050 -
Amo05g0938 384 PANTHER PECTATE LYASE 10 380 - -
Amo05g0938 384 SMART amb_all 109 306 IPR002022 -
Amo05g0938 384 Pfam Pectate lyase 120 300 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0938 Amo-Chr5 12384733 12386138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0938 63 315 Polysaccharide Lyase AT5G09280 70.751 3.14e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0938 K01728 - gmx:100780437 631.328