Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0905 ATGATTTATGAGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGTCATGAAGGACCTTGAAAATGAACGTGATATTGAAGCAGGGCAACTCAACCCCACACAACTAGAAGACCCTAATCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAAGCAAAGTCCACACACAGTGCAAAAGTCCTCCGTGGACTAAGAGACCGCATGGAATCTGACATGGTTGCGGTGCTTCGCAAGGCCAAGATCATCAAGGCAAGGCTTGAGGTCCTGGATCAATCCAACATAGCCAATAGAACTTTATCAGAGTCCTATAAAGAGGGTACACCAATTGATAGGACAAGGAGTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAGTTTCAGTCCTTGAGGGACAAGATACTGTCTGATTACAAGGAAGATTTGAAGAGAAGGTACTACAGCGCGACCGGCGAGGTTCCGAGTGAGGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGACATGGGAAATCAGGTTAGACATGAGGCTGTGATGGATATTCAGAGGAGTTTGAACAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGGGAGAAATTGGACAATATTGAAGATAATATGGCCAGTGCTGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAATCAGATGAAGAAGAAGAACCATAAATGGTGGTGCTGGGTTTGTGCTGTTGGGTTGATTGTGCTGTTGGTGTGCTTCATAGCAATGTTGACTTCTTGA 897 0.4326 MIYEKSFLSYVELKKQVMKDLENERDIEAGQLNPTQLEDPNLTQFFQEVDAIKVEMEEITNLLFDLQQLNEEAKSTHSAKVLRGLRDRMESDMVAVLRKAKIIKARLEVLDQSNIANRTLSESYKEGTPIDRTRSSVTNGLRVKLRDMMNEFQSLRDKILSDYKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGNQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNMASAGNYIHGGTNSLYYANQMKKKNHKWWCWVCAVGLIVLLVCFIAMLTS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0905 298 PANTHER SYNTAXIN-112 8 294 - -
Amo05g0905 298 Coils Coil 295 298 - -
Amo05g0905 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Amo05g0905 298 CDD SNARE_syntaxin1-like 208 263 - -
Amo05g0905 298 CDD SynN 45 192 IPR006011 GO:0016020
Amo05g0905 298 Gene3D - 201 297 - -
Amo05g0905 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Amo05g0905 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Amo05g0905 298 SMART tSNARE_6 197 266 IPR000727 -
Amo05g0905 298 PANTHER SYNTAXIN 8 294 IPR045242 -
Amo05g0905 298 Pfam SNARE domain 240 290 IPR000727 -
Amo05g0905 298 SUPERFAMILY t-snare proteins 39 259 IPR010989 GO:0016020|GO:0016192
Amo05g0905 298 Gene3D - 38 168 - -
Amo05g0905 298 Coils Coil 52 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0905 Amo-Chr5 11764963 11765859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0905 5 298 SNARE and Associated Proteins AT2G18260 58.140 3.23e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0905 K08486 - gmx:112997615 493.812