Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0897 TACAAGAATGAAGACGTTTTCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATATCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCCGCGGCTGCTCTAGGAGTGGGTCCAACCACCGTGTCCGACGATCAGTCACCTTCGAGATCGGCCTTCCTGGTGACGGTGTCGGCCGACTGTAGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTCGGTTCCCGCGTCCAAGCGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGTTTCTTGCTGCTAATGTTCTCAAGCGCCAAAGAGATCATCTCCAAAATAACTTCTTAAAAAGTTGCAATTTGGTTTTGAAAATTGCACCAAACATTAATACTACTACTTTTCATAAGTCAAAAGTTAAAAAAAAAATTTAG 519 0.4855 YKNEDVFSYRGGLELWNHHHHHHQPEHDLISQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTVSADCRNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTSVPASKRRERQQQLASIQQQQFLAANVLKRQRDHLQNNFLKSCNLVLKIAPNINTTTFHKSKVKKKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0897 172 Pfam Domain of unknown function (DUF702) 72 138 - -
Amo05g0897 172 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 72 112 IPR006510 -
Amo05g0897 172 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 132 IPR007818 GO:0003700|GO:0006355
Amo05g0897 172 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 10 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0897 Amo-Chr5 11684643 11686896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0897 8 172 C2H2 Transcription Factor Family AT5G66350 43.353 3.92e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo05g0897 DUF702 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0897 - - aip:107636969 228.024