Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0892 ATGGCAACCAACAACAATGATGATGATATCCCGAAAATGAAGAGGAGGGTGAAACTACAACTGATAGATGATATGAATTCAAGGAAAGCTACATTCAGAAAAAGACGTGCGGGATTGTTGAAGAAGTTGGAGCAACTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTAGTCCAGGAGACAAGAGTCCTACTGTGTGGCCGTCAGTGGAGGAGGCTAAAGAGATCGTGGAGAGATTTGAGGAGATCCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCCGGAGTACAGGAAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGACATCTTCATGCATCAAATCTATAACGAACATAGGCCTGTAACTGATTTTAGCGATGATGAGTTGGACCGTTTTCTCACCTATGTTGACGACAAGTTAAAGGCGGTTAGAAACAGCATAATAAGAACCCATCGCTCTAAAGTGTCAATTTCGTCGCAGCCACTGCCGGCGCCGCCATCAGCAGTGGCGGTGCAGCCACTGATTATTTCTGGTGAAGTTGACAGCAGTGTGCAAGATGAACTGTTATTTAATGCAGAGCAACAACAGAAGAATTTAGAAGATGTTGTTGTTCCTAATGATGAACCGGATGATGATTTTTTTTGGAGGATTGTTCTTTGA 711 0.4402 MATNNNDDDIPKMKRRVKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFSPGDKSPTVWPSVEEAKEIVERFEEIPEPERSSRMVTHPEYRKQKVIWMEKQLEKLKKLNDQKEMDIFMHQIYNEHRPVTDFSDDELDRFLTYVDDKLKAVRNSIIRTHRSKVSISSQPLPAPPSAVAVQPLIISGEVDSSVQDELLFNAEQQQKNLEDVVVPNDEPDDDFFWRIVL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0892 236 Gene3D - 24 107 IPR036879 GO:0003677|GO:0046983
Amo05g0892 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 201 - -
Amo05g0892 236 ProSiteProfiles MADS-box domain profile. 12 64 IPR002100 GO:0003677|GO:0046983
Amo05g0892 236 CDD MADS_SRF_like 13 95 IPR033897 GO:0000981|GO:0000987|GO:0045944
Amo05g0892 236 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Amo05g0892 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 14 201 - -
Amo05g0892 236 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Amo05g0892 236 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Amo05g0892 236 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Amo05g0892 236 SUPERFAMILY SRF-like 14 104 IPR036879 GO:0003677|GO:0046983
Amo05g0892 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0892 Amo-Chr5 11579398 11580452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0892 13 195 Type I MADS-box Gene Family AT1G31630 31.771 1.14e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo05g0892 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0892 - - adu:107487931 429.098