Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0889 ATGATGCAAGAACCAAGCTTGGGTATGATGGGTGGAGGAGGAGGGTTGGGAGGAGAGATGTCTTCAGCAACAGGGTCCGGCGAGCAGCAACAGCGGCAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCGTGCCTGAGAGTTGCAACGCCAATAGACCAGCTTCCACTTATAGACGCACAGCTATCACAATCACACCATGTTCTTCGCTCATATGTCTCTCAACACTCTCTCTCTCTCTCTCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCTCAGTACTTGATAGTGTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCCTGGGAGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGATCAGTCGAGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCTACGGAATCAGAAAGGTCACTGATGGAAAGAGTCCGTCAAGAACTCAAGATTGAGCTGAAGCAAGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTGAGGAAACGTAGAGCTGGCAAATTACCCGGTGACACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTCGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGAATGTAA 894 0.4922 MMQEPSLGMMGGGGGLGGEMSSATGSGEQQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIDAQLSQSHHVLRSYVSQHSLSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0889 297 SUPERFAMILY Homeodomain-like 221 286 IPR009057 -
Amo05g0889 297 Pfam KNOX2 domain 90 141 IPR005541 GO:0003677|GO:0005634
Amo05g0889 297 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 296 - -
Amo05g0889 297 SMART KNOX2_2 87 142 IPR005541 GO:0003677|GO:0005634
Amo05g0889 297 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Amo05g0889 297 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 296 - -
Amo05g0889 297 SMART HOX_1 221 286 IPR001356 GO:0003677
Amo05g0889 297 Pfam KNOX1 domain 34 75 IPR005540 GO:0003677|GO:0005634
Amo05g0889 297 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Amo05g0889 297 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Amo05g0889 297 CDD homeodomain 222 283 IPR001356 GO:0003677
Amo05g0889 297 Gene3D - 218 292 - -
Amo05g0889 297 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Amo05g0889 297 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0889 Amo-Chr5 11408281 11412421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0889 2 295 Homeobox Transcription Factor Family AT1G62990 78.041 1.07e-170 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo05g0889 KNOX2 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0889 - - pvy:116142557 501.13