Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g0889 | ATGATGCAAGAACCAAGCTTGGGTATGATGGGTGGAGGAGGAGGGTTGGGAGGAGAGATGTCTTCAGCAACAGGGTCCGGCGAGCAGCAACAGCGGCAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCGTGCCTGAGAGTTGCAACGCCAATAGACCAGCTTCCACTTATAGACGCACAGCTATCACAATCACACCATGTTCTTCGCTCATATGTCTCTCAACACTCTCTCTCTCTCTCTCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCTCAGTACTTGATAGTGTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCCTGGGAGAAGGAAGTGGGGCAACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGATCAGTCGAGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCTACGGAATCAGAAAGGTCACTGATGGAAAGAGTCCGTCAAGAACTCAAGATTGAGCTGAAGCAAGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTGAGGAAACGTAGAGCTGGCAAATTACCCGGTGACACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTCGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGAATGTAA | 894 | 0.4922 | MMQEPSLGMMGGGGGLGGEMSSATGSGEQQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIDAQLSQSHHVLRSYVSQHSLSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM* | 298 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g0889 | 297 | SUPERFAMILY | Homeodomain-like | 221 | 286 | IPR009057 | - | |
Amo05g0889 | 297 | Pfam | KNOX2 domain | 90 | 141 | IPR005541 | GO:0003677|GO:0005634 | |
Amo05g0889 | 297 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 3 | 296 | - | - | |
Amo05g0889 | 297 | SMART | KNOX2_2 | 87 | 142 | IPR005541 | GO:0003677|GO:0005634 | |
Amo05g0889 | 297 | ProSiteProfiles | ELK domain profile. | 199 | 219 | IPR005539 | GO:0003677 | |
Amo05g0889 | 297 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 3 | 296 | - | - | |
Amo05g0889 | 297 | SMART | HOX_1 | 221 | 286 | IPR001356 | GO:0003677 | |
Amo05g0889 | 297 | Pfam | KNOX1 domain | 34 | 75 | IPR005540 | GO:0003677|GO:0005634 | |
Amo05g0889 | 297 | ProSiteProfiles | 'Homeobox' domain profile. | 219 | 282 | IPR001356 | GO:0003677 | |
Amo05g0889 | 297 | Pfam | Homeobox KN domain | 239 | 278 | IPR008422 | GO:0003677|GO:0006355 | |
Amo05g0889 | 297 | CDD | homeodomain | 222 | 283 | IPR001356 | GO:0003677 | |
Amo05g0889 | 297 | Gene3D | - | 218 | 292 | - | - | |
Amo05g0889 | 297 | SMART | KNOX1_2 | 32 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Amo05g0889 | 297 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g0889 | Amo-Chr5 | 11408281 | 11412421 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g0889 | 2 | 295 | Homeobox Transcription Factor Family | AT1G62990 | 78.041 | 1.07e-170 | 473 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Amo05g0889 | KNOX2 | 1.2e-16 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g0889 | - | - | pvy:116142557 | 501.13 |