Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0874 ATGTTGGCTGGGTGTTCTAGTTCTACATTGTTGTCACCAAGGCATAGATTGAGGAGCGAACCATCACCACAGTTTCATCATCAAGCTTGTCATCTTCAGCTACCACCTTCCATGAGCACGCAGAGATTGGACTTGCCAGCTTGCACCTTCCCAAGGAACAACAAAGTCTCACCAAGGCCTTCTGTTGTCACCACCAACACCAACACCAACAAGCCCATTGAAGCCAAGACAAGCTCTTATTCTCTCAAGCAGCACATTAGGCTTCCGCCATTGGCAACCACACCACAAGTTATCACATCTGCACCACCTTCACCCTTCCTTGAAGCCAAAGAAGAGCCCTTCTGGGACAACAACAACAACAACAACAACAGGAGCTTGAAGAAGAGGCCAGTGGATAATGACGACTCTTTTGACAGCAGAGCCAAGAGGAAGAAGGGTAGCAACAGCAACAGCAACAGCACCAGCGACAATGGCGATTCTTCCGATGATGTTATGGAAGAAGAAGGAACAGGAGAGGGTCTGAGTTTATCTGCAAACTTCTGGTTACAGCCATCTTCACTTCCTCCATTCTCTCTAACATGTTCAGGGGAGGAAGAGAGGGTGTGCTTCGTTCCAAGCGAGGTGGTTTCCGCTCCTTGGGTGGAATCCGCAATAACAAAGATAACAAACCATGGCGAGAAGGAAGGCGAGGGTGGTGGCAGCCGCTTCCCTCCGCCACAACCCTCAGCCTCCTCCAACACCTCATCAGAGAGCCAAGGTTTAAGCCTCAGGCTGAACGAGAATCCTGAAGTCGGAAACGGTTCAGGTAACCCTTACCATAACCACCACCATGAAGAAACCACCGCGGAGGAAGACGAAGATATCCAAGAGGAGCACCGTGGATTCGAGCTTGTTAGTTTACTAACCGCATGCGTTGAAGCCATTGGAACAAAGAACATCGCCGCAATCAACCATTTCATAGCGAAATTAGGAGATCTTGCTTCACCAAGAGGAACAAGTTCAATGAGCCGAATCTGTTCTTACTTCACAGAAGCCCTAGCCATAAGAGTGACGAGGCTATGGCCTCACATTTTCCACATCACCATCCCTCGGGAGCTCGATCGTGTTGTGGAGGACGAAAACGGCACCGCATTGAGGCTCTTGAACCAAATCACACCGATCCCTAAGTTCCTTCACTTCACATCGAACGAGATGCTGCTGAGAGCCTTCGAAGGCAAAGACAGAGTCCACATCATAGATTTCGACATCAAGCAAGGTCTTCAATGGCCGAGCTTGTTCCAGAGCTTGGCTTCCAGATCGAACCCTCCCAGCCACGTCAGAATCACCGGCATCGGCGAATCCAAGCAAGATCTGAACGAAACAGGTGACAGGCTCGCCGGTTTCGCAGAGGCGCTGAACCTTCCGTTCGAGTTCCATGGAGTGGTGGACAGGCTGGAAGACGTGAGGCTGTGGATGCTTCACGTGAAGGAGAACGAAACGGTTGCGGTGAACTGCGTGTTCCAGCTTCACAAGACTCTGTATGACGTAAACGGCGGAGCGTTGAGAGATTTCTTGGGACTGATACGAAGCACGAACCCCGCAATGGTGGTTGTGGCGGAGCAAGAAGCAGAGCACAACGATATGAGGTTGGAGGCTAGGGTTTGCAACTCGTTGAAATACTACTCAGCGTTGTTTGACTCGGTTGAGCACTGTCTTGAAGGGGATAGCAGTGCGAGGAGGAAGATAGAGGAGATGTTTGGAAGGGAGATTAGGAACATTGTGGCTTGTGAGGGGAGTGATAGGTTGGAGAGGCATGAGGGTTTTGGGAAGTGGAGGAAGATGATGGTGGAGCAAGGAGGGTTCAGGTGCTTGAGTGTTACTGAGAGAGAAAGGGTTCAGAGCCAGTTGCTGATGAAGATGTACCCTTGTGACAGTTACAGTGTTAGGAATCATTCAAGTGAGGCTCTCAGTCTTTGTTGGATGGACATTCCTTTGTTCACTGTTTCAGCTTGGGCACCTCTTGATGCTGCAGGAACCTCTTCATCTGTTTCTCAGCCAATTTGA 2043 0.5012 MLAGCSSSTLLSPRHRLRSEPSPQFHHQACHLQLPPSMSTQRLDLPACTFPRNNKVSPRPSVVTTNTNTNKPIEAKTSSYSLKQHIRLPPLATTPQVITSAPPSPFLEAKEEPFWDNNNNNNNRSLKKRPVDNDDSFDSRAKRKKGSNSNSNSTSDNGDSSDDVMEEEGTGEGLSLSANFWLQPSSLPPFSLTCSGEEERVCFVPSEVVSAPWVESAITKITNHGEKEGEGGGSRFPPPQPSASSNTSSESQGLSLRLNENPEVGNGSGNPYHNHHHEETTAEEDEDIQEEHRGFELVSLLTACVEAIGTKNIAAINHFIAKLGDLASPRGTSSMSRICSYFTEALAIRVTRLWPHIFHITIPRELDRVVEDENGTALRLLNQITPIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPSHVRITGIGESKQDLNETGDRLAGFAEALNLPFEFHGVVDRLEDVRLWMLHVKENETVAVNCVFQLHKTLYDVNGGALRDFLGLIRSTNPAMVVVAEQEAEHNDMRLEARVCNSLKYYSALFDSVEHCLEGDSSARRKIEEMFGREIRNIVACEGSDRLERHEGFGKWRKMMVEQGGFRCLSVTERERVQSQLLMKMYPCDSYSVRNHSSEALSLCWMDIPLFTVSAWAPLDAAGTSSSVSQPI* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0874 680 MobiDBLite consensus disorder prediction 224 290 - -
Amo05g0874 680 ProSiteProfiles GRAS family profile. 288 665 IPR005202 -
Amo05g0874 680 MobiDBLite consensus disorder prediction 272 290 - -
Amo05g0874 680 MobiDBLite consensus disorder prediction 50 172 - -
Amo05g0874 680 MobiDBLite consensus disorder prediction 127 145 - -
Amo05g0874 680 MobiDBLite consensus disorder prediction 1 15 - -
Amo05g0874 680 Pfam GRAS domain family 297 664 IPR005202 -
Amo05g0874 680 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 669 IPR005202 -
Amo05g0874 680 MobiDBLite consensus disorder prediction 238 268 - -
Amo05g0874 680 MobiDBLite consensus disorder prediction 1 27 - -
Amo05g0874 680 PANTHER SCARECROW-LIKE PROTEIN 28 6 669 IPR030027 -
Amo05g0874 680 MobiDBLite consensus disorder prediction 54 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0874 Amo-Chr5 11054774 11056816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0874 1 664 GRAS Transcription Factor Family AT1G63100 55.857 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g0874 GRAS 1.1e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0874 - - lang:109333178 843.958