Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0863 ATGTCCAACACACGCTCCCCGACGCGTTCCTCCGAGGACATCGTCGATTCCACGCCGTTTCTCGGCAATACCGGGACTGGCGCTGCCACCGACGAATTCAATTCAGGCCGCCGATTCGTACGGCGGCAGAGCCTCCGACAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGAGGAGGATGATGAGAGAGCCGTCGATGGTGGTGCGAGAGACGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGATCCTCGACATGGTTTGGAACTTCGCGTTCGTCGTGGTGGCGGCGACGGTGTTGTTTCTGAGCAGGAAAGAATCTCCGGAAATGCCTCTGAGGCTGTGGATTATAGGTTACGCTATGCAGTGCGTCCTTCACATGGTTTGCGTTTGCGTTGAGTACAGGAGAAGGAGGAGGATCCAGCGGTCGCAGTCTCTGAACGGTGGTGGAGAAGAAAGGGTTGGAAGCAGTGGGAATTTGAGTTCACCTTCGAGGGAGGGTTCTTCGCACTATGTCACATTGGGCCAGTTGGATGAAGACAGCACTAGTGTTGCAAAGCATTTGGAGTCTGCAAATACGATGTTTTCTTTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCTGGTAGTCAATCTTTAGTCGAAGAATCTCCTCTTCTTTACTGGCTATGTATAATCTTCCTTGGTTTTGATGTCTTCTTTGTTGTATTCTGTGTTGCACTGGCATGTATTATTGGTATCGCTGTTTGCTGTTGTCTTCCATGCATCATTGCCCTTCTTTATGCAGTTGCAGACCAGGAAGGAGCATCAAAAGAGGATATTGAGCAGCTATCAAAGTATAAATTTCGGAAAGTTGAAAACAATGAGAAACTTGCTGGAAATACACAAGGACCTGTTGGAGGAGTAATGACCGAATGCCGATCTGACTCACCTAGTGAACATGTTCTTGCTGAGGAGGACGCGGAATGTTGCATCTGCCTTTCTTCCTATGACGATGGAGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGCTCCTGCGTTGATAAATGGCTGTATATCAATGCTACTTGCCCACTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG 1164 0.4966 MSNTRSPTRSSEDIVDSTPFLGNTGTGAATDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVILDMVWNFAFVVVAATVLFLSRKESPEMPLRLWIIGYAMQCVLHMVCVCVEYRRRRRIQRSQSLNGGGEERVGSSGNLSSPSREGSSHYVTLGQLDEDSTSVAKHLESANTMFSFIWWIIGFYWVSAGSQSLVEESPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKYKFRKVENNEKLAGNTQGPVGGVMTECRSDSPSEHVLAEEDAECCICLSSYDDGVELRQLPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLGQEEV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0863 387 CDD RING-H2_RNF111_like 331 375 - -
Amo05g0863 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Amo05g0863 387 MobiDBLite consensus disorder prediction 153 177 - -
Amo05g0863 387 Pfam Ring finger domain 331 373 IPR001841 -
Amo05g0863 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 387 - -
Amo05g0863 387 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g0863 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 385 IPR013083 -
Amo05g0863 387 PANTHER TARGET OF ERK KINASE MPK-1 5 387 - -
Amo05g0863 387 SMART ring_2 332 372 IPR001841 -
Amo05g0863 387 SUPERFAMILY RING/U-box 323 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0863 Amo-Chr5 10906930 10911153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0863 24 380 C3H Transcription Factor Family AT1G68070 49.167 4.11e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0863 - - gmx:100790497 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2160 01 65302191 65306929 Amo05g0863 05 10906930 10911153 PCT
Amo11g1705 11 76323673 76325525 Amo05g0863 05 10906930 10911153 PCT