Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0852 ATGAACAGTGGTAGCAGGCAAAGCAGCACAAGGTGGACACCAACAACGGATCAGATAAGGATATTGAAGGATTTATACTACAACAATGGAGTAAGGTCTCCAAGTGCAGAACAGATTCAGAGGATCTCTGCYAGGCTTAGACAGTATGGTAAGATTGAAGGCAAGAATGTCTTCTACTGGTTCCAGAATCACAAGGCCCGTGAGAGGCAGAAGAAGAGGTTCACTTCTGATTCTACTACTACTAYCAATGYCAATAATCTTCCACTTCCAACCATGCATAGAGGATCCACCATTAACAACAACAACAATGCTCCTAATTGTTGGAATAAACCTACTGAAGACATTACTACTACTACTACCTTTCATAGCAACAAGTATTATTCCAACAATATGCCATCATCAACTGGTAAAAAAGTAAAAAAAAAAAAAAAAATTAAAACCCTTTTGGGACTATTAGTAGAAATGGGGAATTATGGCTGTGGATCTGTTCCCATGGAGAAGAGTTTTAGGGAGTGTACAATATCTGCAGGTGGAGGAAGCAGTGTTGGTGGTGCCATAAACCACAACCTGGGATGGGTTGGTGTGGATCCTTATTCATCAACTTACACTGCTTTCTTTGACAAAATAAGGCCTGAGATTGAAACCCTTGAACAAGAACAAGGTGATGATAATAATGATGATGAAGAAATTGATGATGTCACTGAGATTGAAACCCTGCCTTTGTTCCCTATGCATGGTGAAGACATCCATGACTATTGCAGCCTCAGATCCAATAATTCTTCTTCTTCTTCTTTTAACTATGATCATCATCATCATGGATTCAACAACGGTGGTTCTCGTGCTTCCTTGGAGCTTAGTCTCAATTCCTACGGTCGCAAGTCTCCAGATTATGCTTGA 897 0.4013 MNSGSRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDSTTTXNXNNLPLPTMHRGSTINNNNNAPNCWNKPTEDITTTTTFHSNKYYSNNMPSSTGKKVKKKKKIKTLLGLLVEMGNYGCGSVPMEKSFRECTISAGGGSSVGGAINHNLGWVGVDPYSSTYTAFFDKIRPEIETLEQEQGDDNNDDEEIDDVTEIETLPLFPMHGEDIHDYCSLRSNNSSSSSFNYDHHHHGFNNGGSRASLELSLNSYGRKSPDYA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0852 298 Gene3D - 2 70 - -
Amo05g0852 298 Pfam Homeodomain 9 70 IPR001356 GO:0003677
Amo05g0852 298 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 292 IPR044555 GO:0003700|GO:0099402
Amo05g0852 298 CDD homeodomain 10 72 IPR001356 GO:0003677
Amo05g0852 298 SUPERFAMILY Homeodomain-like 5 75 IPR009057 -
Amo05g0852 298 MobiDBLite consensus disorder prediction 213 237 - -
Amo05g0852 298 MobiDBLite consensus disorder prediction 77 105 - -
Amo05g0852 298 SMART HOX_1 7 75 IPR001356 GO:0003677
Amo05g0852 298 MobiDBLite consensus disorder prediction 218 235 - -
Amo05g0852 298 ProSiteProfiles 'Homeobox' domain profile. 5 71 IPR001356 GO:0003677
Amo05g0852 298 PANTHER PROTEIN WUSCHEL 5 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0852 Amo-Chr5 10795998 10797540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0852 6 288 Wox Gene Family AT2G17950 38.966 2.72e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo05g0852 Homeodomain 1.3e-17 CL0123