Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0842 ATGAAGCGGGCAAGGAAATCGAAATCGAACAGGGTTTCGTGGGCTCCTGCGTCTAATTTGTGTCAGATCAAATTGTTTCTGTCTGACGACTGTCCTTCAAAAGTTGGACTGAAATCTCAAGATCATCTTCAAGCAAAGACATCTTCAATGTTGCCTTCAAGTACTAATGAACATATGGACTTACCTCCTGGATTTGAAGACAATCACTTCTTAAACCAGCCAAAGGTTGAACTCTCTCGCATCTCTCCGATTAAATGGGAGCGCCCTCCTCTGTTTGCTTTCAGACATGATTGGCGYGTTGCTGCTGGTGAAGAAAGTAAGGAGAAAATGGATCAAAAGCTAAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCTCGCATTTCTGCCATACCTCCCAGCCCTTCTGTTTCTCATGATGTAGACAAGGAAGGTTATGATGATAACCACACTCCTCTCATCCCTATCATTCCCATTGAGGAGGARGATTCGATGGATATTAATCCTGAAGTGTCAGACGCAAAACTCGCAGATACCCCCACTAARTTGCTGTCACAAAACTTGCAGCAATATATAGCAGCTGCAACACCTATTAATTCACAATGCAACACCTCTGCTGCTGTTCCCTTATCTGCAGGTGGAAACTCCATGCTGGCAATTTCTCCTGGTTCGGAACCAGATTTAGCTGCAGCCTCAGCTCTGGTAGCAGCAGCCATTTTGAAGAGTAATGAGCAAGGAAACCCAATTGATATGGATCTACTTGTTAAAATATTTAATGACCCAATAATGATAGAGAAATTGGTTAACCAACGGGGAACTGCAACCGCCACCATAACTACCTCTTCAAMTACTGGGTTGAAATCTGCTGCTTCTGGGACTACACCCACAAGCACAGTTGGTTTAGTSCCTTCTTCTGCTCCAAAGCAAGCAACTTCCTTAGCCTCCATGTTKMSAYCTACACTTAATAAGCCAGCAATTCCCCCAGTTCCATTRTCTAGKCCTTCCTCTGGTAATTTAGYAACTAGCTCARTTACCCTGCCTCCACAACCAACTACACAATCACCTTCACCTCCACCTCCAYCYMCSTCYACSTYTAMSSSKMAYARGYMYRKWSMYRSYAAYRSTMACCATGTAACGAATGGAGCACTTCCCTCTTTAGAACCCCAGCCTCCTCCTCAAGATACAACTCTGTTATCTGGTATAAAGCGCACGTCATCATTACCTTGTGTGAATTCATCCAGTGAATTGAGCACAGTGYCTTTGAATTCAACTGCTGTGAATTTGCATGCAGGTGCRAACCAGGTGCGAKCAACGGCTGCCACAGTGGCTTATCAAACAAGTAGCACCGGTTCTTCTTTTGCAGTGAAGGATGCCAACTATTATAAGAACCTTATTAGGCAACATGGTGCAGATAAGCAAGAYGGTCAAGAATCACTAATAGGTATCCGTCATAATAATTTCCAAGACTTTAAAATGWTACATAACCTTAAACAAAGGGAAGTGATATTCAAAAACCAGAAACCTTGCATATACTTTAACAGCTCAAGGGGTTGCCGAAATGGTGCAAATTGCCCCTATCAGCATGATATCTCAGCTCAGTGGGGAGCTGGTAATGACCTAGTGGCACAAAATGCAAAAAGAATGAAACTAGGTACAGAAGTTAATGGGAGGATATAA 1674 0.4188 MKRARKSKSNRVSWAPASNLCQIKLFLSDDCPSKVGLKSQDHLQAKTSSMLPSSTNEHMDLPPGFEDNHFLNQPKVELSRISPIKWERPPLFAFRHDWRVAAGEESKEKMDQKLREMKVLEAVYPRISAIPPSPSVSHDVDKEGYDDNHTPLIPIIPIEEEDSMDINPEVSDAKLADTPTKLLSQNLQQYIAAATPINSQCNTSAAVPLSAGGNSMLAISPGSEPDLAAASALVAAAILKSNEQGNPIDMDLLVKIFNDPIMIEKLVNQRGTATATITTSSXTGLKSAASGTTPTSTVGLVPSSAPKQATSLASMXXXTLNKPAIPPVPLSXPSSGNLXTSSXTLPPQPTTQSPSPPPPXXSTXXXXXXXXXNXXHVTNGALPSLEPQPPPQDTTLLSGIKRTSSLPCVNSSSELSTVXLNSTAVNLHAGANQVRXTAATVAYQTSSTGSSFAVKDANYYKNLIRQHGADKQDGQESLIGIRHNNFQDFKMXHNLKQREVIFKNQKPCIYFNSSRGCRNGANCPYQHDISAQWGAGNDLVAQNAKRMKLGTEVNGRI* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0842 557 MobiDBLite consensus disorder prediction 284 399 - -
Amo05g0842 557 MobiDBLite consensus disorder prediction 333 348 - -
Amo05g0842 557 ProSiteProfiles Zinc finger C3H1-type profile. 502 530 IPR000571 GO:0046872
Amo05g0842 557 MobiDBLite consensus disorder prediction 132 151 - -
Amo05g0842 557 MobiDBLite consensus disorder prediction 284 317 - -
Amo05g0842 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 549 - -
Amo05g0842 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0842 Amo-Chr5 10624760 10629471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo05g0842 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0842 - - adu:107488052 955.281