Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0838 ATGGAATCATCGTGTGTCCCACCTGGTTTTCGGTTCCACCCAACGGATGAAGAGCTTGTTGGTTATTATCTGAGGAAGAAAGTGGCATCTCAGAAGATAGACCTTGACGTTATCAGAGAGATCGATCTCTATCGTATTGAACCCTGGGATCTCCAAGAGAGATGTAGGATCGGGTATGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACGGGGACTCGAACGAACAGGGCCACCATGGCGGGGTTCTGGAAGGCCACCGGAAGAGACAAGGCAGTGTACGACAAGGCGAAGCTGATCGGGATGAGGAAGACTCTCGTGTTCTACAAAGGGAGAGCCCCTAACGGCCAGAAAACAGACTGGATCATGCACGAGTACAGACTTGAATCCGATGAAAACGGACCCCCTCAGGAGGAAGGGTGGGTTGTTTGTAGAGCATTCAAGAAAAGGACGACAAACGGGCAAACGAAGACTATGGAAGGATGGGATTCAAGCTACTTGTACGAGGAAGGGAGCGGCGGCGGTGGCGGCCCGGTTGTTGAGTCAATTGAGCAGCTGCTCTCAAGGCAGAGTCGTCATCATCATCATCATCAAAGCAGCTTCATGTGCAAGCAAGAAATAGAGAACATGCATGCAAATATAGCAGCAGAGCAATTTGTACAGCTTCCACAGCTTGAGAGCCCAAGTTTGCCGCTAGTTAAGAGGCCAACAACAAGCACAATGGCACTAGTCTCAGAAAGCAACGAAGATCATAACATGTTATCGAAGAAAGTAGTGACTGATTGGAGGGATCTTGATAAGTTTGTGGCATCTCAACTGAGTCATGGAGGAGACAGTAGTAGGCACGAAACTGAAACCGATGATGCAGCAGTGCTCCCAAGCTTTATGGATAATAACAACCATGACAACAGTGATAGCATCTCGGACATGTCATTGCTGCAGCTTCTGCAGAGTAGTAGTAGTAATAGTAGGGTCAACAATGAAGGGAACAGGTTGATGATGAGCATGAGCCCCTTTCTAAACACAAGCTCTGACTGTGATATTGGGATATGCGTCTTCGAAAATTAA 1086 0.4779 MESSCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNGQTKTMEGWDSSYLYEEGSGGGGGPVVESIEQLLSRQSRHHHHHQSSFMCKQEIENMHANIAAEQFVQLPQLESPSLPLVKRPTTSTMALVSESNEDHNMLSKKVVTDWRDLDKFVASQLSHGGDSSRHETETDDAAVLPSFMDNNNHDNSDSISDMSLLQLLQSSSSNSRVNNEGNRLMMSMSPFLNTSSDCDIGICVFEN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0838 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 319 - -
Amo05g0838 361 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Amo05g0838 361 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Amo05g0838 361 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Amo05g0838 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 319 - -
Amo05g0838 361 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0838 Amo-Chr5 10555630 10557319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0838 1 361 NAC Transcription Factor Family AT2G18060 59.326 1.05e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g0838 NAM 3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0838 - - aprc:113869508 451.44