Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0828 ATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCACAGCTCGTTGGAGTTCCCGCTGCGGTTGACGGCGATGTTGTCATGGCGGAGAGGGACGGCGGCGGGAGTGTTCCCAATCTGGAGGTGGCCGTCGGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGCCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGGCGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCGAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATACGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCCTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCACCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATTTCAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACCTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTACAAGTAAGGCTGCTGAGCCTTACAAAATTGGAACAAGAACAACTGATATGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAAAGTATAAAATATGGGCTTTCCAATAGATTGACTGTGGGTGAGATCATGGACAAAGCATTGACATTTCAAGCAATGAGAGTTAATGATTTGCTGGAAGCTGAGATACTGCGGCTTACTCATCTTCGTGATAGAGCAAGTGAAAAAGGGCATAGAAAAGAGCTCAGAGAATGTGTGGAGAAGTTACAGCTACTAAACACACCAGAGGAACGACAGCGCAGGATGCGTGAAATTCCAGAGGTACACTCTGACCCAAATCTGGATTTGATGTTCGAGTCTGATGAAGATGCAGGAGAGTCAGATGAAAGGAAGCAAGATGGAAATATATGGTCGAAGTATCCTGGTTTTGACAGAAAAGAGAAGGAGCCCACTTTGCCTAAAAGTTGTGATAGTGTCTTGAATGATGATGGATGCAAAACACAAGATTTTTCTGCTGCTGTCCATGAACAGAGTGGCAATGCCTGCGTGACAAAAAGTCAGATAAAACCTAATGATACAGTGTTTGATGATAACCCTAATGTAGTTGTGAAATCAGAACCATCTGGTGTTGCGTTGGACATTTCATCGTCTCCTCAATCTGTAGGGGTAGAACAGTCATTCAATGATTTTGTGAATGATAAATCATGGCATTATCAGGACCCAACTGGGAAGGTTCAAGGACCTTTTTCCATGTTGCAACTGTTTAAGTGGAATGCAAGTGGAGGTTTCCCTCCTAATCTCAGGATATGGAGGATAAATGAAAAACAAGATAGCTCTATATTGTTAACCGATGCCCTAAGTGGGAAGTGTTCCAAAAATGTGTCAATGCCATATTTCAGCCAACTGCTGTCTTTGGGGATCAGTGGTACAGTGGATACCAAAGAGGATATTAAAGATTATAGTCAGGATGGTTGCAGCACTGCAGCAAGGAATGAAACTCGTTCAGACAACCAAATTAATGAGCAGAACAGGGAGCTAAAGGTGGATGATACTCGTACCCAGTCTGATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGAACAGCCCCATGCATACCATCCACAACCTTCAGTGGCCATTTCTGAGAATATGAAGGAGAATTCTGATAAATTAAATGAAGGTAATCGGATTGGGGGAAACTCTGCAGATAAAGGGAATCCTGGTTTGAACAGGACTTCTGATGGTCAGAGTAACAGTGGGCAGAGTTACCAGAAGCAATCATACAGTGAAGATAATTCAGGGCAATCTTCTGAACAGAACTGGAGAGGCCCTCGTGTTAACAATTCTTCCAATTGTGTGGTTACCACATCAGCTGAAGTTTTGGTTACAAAGACATCACCACCTAAGCTAGGATTTGATTTACATAGTTCTCCATCCCATCCTGACCAGAACTGGATAGGCCCTCATGTAAATACTTCTTCTGATTGTGTGGTTCCCACATCAGCTGAAGTTTCTGTGCCAAAGACATCACCACCTAAGCTAGGATTTGATTTGCATATTCCTCCATCACAGCTTGAACAAGACTGGAGAGACCCTCATGTAAATACTAATTCCAATTGTGTGGTTACTACATCAGCTGAAGTTTCTGTGACAAAGATATCACCACTTAAGCTAGGATTTGATTTGCATAGTCCCCCATCCCATCCTTCGACGTGGCAAGCATTCATCGGTGAGACCACTGACTTTAGCTCATTAGTTGACGTTGATGAATCAGTCTCAGATCTGTTAGCTGAGGTGGAAGCAATGGAATCACTTGGTGGTGGTGGTGGTGGTGGCGGCGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAATTGACTGACAGTTCTAAAAATGATTGCCTCAGTTTTGCAGACGGGCTTAGCCCAGTACTTGATGCAGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTGCACTTGCAATCTCAGTCAACAGCAGCAGAGGAACCATTGCGGCAAGCAGATATACATCATCATCATCATCATCATCATCATCATCAGAGAGTATCTGGGGAACATTCTTCAAGGAGTTCTGAAGTTAAGGTGGGTACAAAGAGCATTAGTGTTTCAGGTTATCAATGGGAATCAGGCTCAGAAAATTCAACCATTGGTCCATCGACTGCAACCTGGAGCATTGCTACAGACCCCACTTGGAGAGTCGGGTCAGAGAATACAAACTTGGGATGGAGTGGAATGGATAGAGGAAATGTGAACATTGGCTGGGGAGTGGGGCAGTCAGCAGTGCAGGAGAACAGGAGCACAAGTTCATACACTCCTACAGTTTCTCCAAGCTTTGGTGGAAGTCAAGCAAGATATGGCAGCGATCGACCTTCTGTGCCTAGAGATCGGGGTTTTCATGGTCATGGTAGGGAATCAGCTGTTGCTAGAGGCAGAACTGCGTGGAACCGGCAAACTTCATTTGGTGTTGGAAACGGAGGCTCACACAGGCCTCTGCCCAAAGGGCAACGAGTCTGTAAATTTTATGAAAGTGGGCGCTGTAAGAAGGGGGCATCCTGTGATTACTTCCACCCATGA 4230 0.4466 MEQQQLQQSGAATAGAAPPVEGARDLGDSQLVGVPAAVDGDVVMAERDGGGSVPNLEVAVGDGGATAVKRKRGRPAKGAPRASAAGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNTEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECHREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLISVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDMMLEILNLNRKEAISIDEISNQEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVNDLLEAEILRLTHLRDRASEKGHRKELRECVEKLQLLNTPEERQRRMREIPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPGFDRKEKEPTLPKSCDSVLNDDGCKTQDFSAAVHEQSGNACVTKSQIKPNDTVFDDNPNVVVKSEPSGVALDISSSPQSVGVEQSFNDFVNDKSWHYQDPTGKVQGPFSMLQLFKWNASGGFPPNLRIWRINEKQDSSILLTDALSGKCSKNVSMPYFSQLLSLGISGTVDTKEDIKDYSQDGCSTAARNETRSDNQINEQNRELKVDDTRTQSDGKDESVRSNGWQEQPHAYHPQPSVAISENMKENSDKLNEGNRIGGNSADKGNPGLNRTSDGQSNSGQSYQKQSYSEDNSGQSSEQNWRGPRVNNSSNCVVTTSAEVLVTKTSPPKLGFDLHSSPSHPDQNWIGPHVNTSSDCVVPTSAEVSVPKTSPPKLGFDLHIPPSQLEQDWRDPHVNTNSNCVVTTSAEVSVTKISPLKLGFDLHSPPSHPSTWQAFIGETTDFSSLVDVDESVSDLLAEVEAMESLGGGGGGGGGGLESPTSIMKCGEELTDSSKNDCLSFADGLSPVLDAGKGDALSSTGDLHLQSQSTAAEEPLRQADIHHHHHHHHHHQRVSGEHSSRSSEVKVGTKSISVSGYQWESGSENSTIGPSTATWSIATDPTWRVGSENTNLGWSGMDRGNVNIGWGVGQSAVQENRSTSSYTPTVSPSFGGSQARYGSDRPSVPRDRGFHGHGRESAVARGRTAWNRQTSFGVGNGGSHRPLPKGQRVCKFYESGRCKKGASCDYFHP* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0828 1409 MobiDBLite consensus disorder prediction 876 904 - -
Amo05g0828 1409 ProSiteProfiles GYF domain profile. 772 826 IPR003169 GO:0005515
Amo05g0828 1409 MobiDBLite consensus disorder prediction 660 694 - -
Amo05g0828 1409 Pfam Plus-3 domain 466 569 IPR004343 GO:0003677
Amo05g0828 1409 SUPERFAMILY FYVE/PHD zinc finger 97 158 IPR011011 -
Amo05g0828 1409 Pfam GYF domain 775 815 IPR003169 GO:0005515
Amo05g0828 1409 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 21 1409 - -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g0828 1409 Gene3D SWIB/MDM2 domain 318 407 IPR036885 -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1193 1251 - -
Amo05g0828 1409 SUPERFAMILY Plus3-like 462 589 IPR036128 GO:0003677
Amo05g0828 1409 SUPERFAMILY CCCH zinc finger 1384 1408 IPR036855 GO:0046872
Amo05g0828 1409 SMART swib_2 326 404 IPR019835 -
Amo05g0828 1409 Gene3D - 774 830 IPR035445 -
Amo05g0828 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 193 IPR013083 -
Amo05g0828 1409 ProSiteProfiles SWIB/MDM2 domain profile. 318 401 IPR003121 -
Amo05g0828 1409 ProSiteProfiles Zinc finger C3H1-type profile. 1384 1409 IPR000571 GO:0046872
Amo05g0828 1409 ProSiteProfiles Zinc finger PHD-type profile. 101 167 IPR019787 -
Amo05g0828 1409 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 21 1409 - -
Amo05g0828 1409 SMART gyf_5 773 828 IPR003169 GO:0005515
Amo05g0828 1409 Coils Coil 81 101 - -
Amo05g0828 1409 CDD PHD5_NSD 103 148 - -
Amo05g0828 1409 SMART PHD_3 103 149 IPR001965 -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1315 1336 - -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1315 1385 - -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1341 1358 - -
Amo05g0828 1409 ProSitePatterns Zinc finger PHD-type signature. 104 164 IPR019786 -
Amo05g0828 1409 SUPERFAMILY GYF domain 770 825 IPR035445 -
Amo05g0828 1409 SUPERFAMILY SWIB/MDM2 domain 324 401 IPR036885 -
Amo05g0828 1409 ProSiteProfiles Plus3 domain profile. 461 594 IPR004343 GO:0003677
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1221 1235 - -
Amo05g0828 1409 CDD SWIB-MDM2_like 324 399 - -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 946 991 - -
Amo05g0828 1409 Gene3D - 462 591 IPR036128 GO:0003677
Amo05g0828 1409 MobiDBLite consensus disorder prediction 1200 1214 - -
Amo05g0828 1409 Coils Coil 595 615 - -
Amo05g0828 1409 SMART rtf1 461 571 IPR004343 GO:0003677
Amo05g0828 1409 MobiDBLite consensus disorder prediction 863 991 - -
Amo05g0828 1409 Pfam SWIB/MDM2 domain 326 399 IPR003121 -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 64 94 - -
Amo05g0828 1409 MobiDBLite consensus disorder prediction 663 692 - -
Amo05g0828 1409 CDD GYF 772 827 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0828 Amo-Chr5 10311715 10319364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0828 101 181 PHD Transcription Factor Family AT4G14920 35.802 1.54e-07 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Amo05g0828 Plus-3 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0828 - - gmx:100801151 1874.37