Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0823 ATGTGGGATCTGAATGACTCTCCCGACCACAGAAAGGACTACGACTCTGAAGAAGCTTGTTCTTCACCCAAGACTACCACTACTTCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCAGTCCTCCTAGAAGACGGATCCGAAGAAGACGAAGAACAAGCCAGCAGAACAACAACRACTCTCAACAACATCAACAGTAGCAGCAAGATATTCGGCTTCTCCGTCACCCCCATGGACGGTGACGACAACCCTCCCGTCACCCACCAGTTTTTCCCGGTGGAGGACTCCGGCTGTGGCGGAGGAGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCTCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGCAGTAGTTGGGGGCGGTGGGAAATCGGCGGCGGTGGAAGTCTCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTSACCTTTTACCGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCGCGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAAGCACTGGGTTTCCAAGAGGAAGTTCCAAATATAGAGGTGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTATGCCCCCTCTTCCCCCCTTCTCCCCTTCAATTTCATCTATTTTGCTAAGCTACCCTCAATTTTATTTTATTTTATTAGGTACGTTTATCTGGGCCTCTTTGATACTGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAACGGTGCAGCAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCAAAGCATAGCAGTAATCAAGCACTGGGGACAACGGATTGGCACAATGAGGGAGCCAACAATAACAAGCATAAGCTGGTGAATATACTACCAAAACCATGTAGTAGTAGAAGCAACATAGAGCAGCATGGACAGCGTGAGAGTGAAGCCATGGCCCCAATGCCGCGGCTGCATCAAACTCAATTTCCGCTCTCAAACGAAATGCATAGATACGGTCCTTATTATAGATCCCATCATGCAGCTGGAGACACTCCGCATCAAATGCTACACGCGTTTCCACCAAATTTTCATTTTCCAAGCAGCAGCAAAGGAGGCCGAATTGGAAGCGAGCTTTCGCTGTCATCATCAATGAGCGATCAAGAACAACATGTACAGTGGCAAGCAGGAGCTGGAGGAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATTTTAACACCCTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTAA 1641 0.4906 MWDLNDSPDHRKDYDSEEACSSPKTTTTSMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTTLNNINSSSKIFGFSVTPMDGDDNPPVTHQFFPVEDSGCGGGGGGGGSSSSSSFPRAHWVGVKFCQSEAVVGGGGKSAAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYAPSSPLLPFNFIYFAKLPSILFYFIRYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAADHNLDLSLGNPSSKHSSNQALGTTDWHNEGANNNKHKLVNILPKPCSSRSNIEQHGQRESEAMAPMPRLHQTQFPLSNEMHRYGPYYRSHHAAGDTPHQMLHAFPPNFHFPSSSKGGRIGSELSLSSSMSDQEQHVQWQAGAGGGPPHLLATAAAASSGFPPQILTPSQGWIHKNGFHTLMRPS* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0823 546 MobiDBLite consensus disorder prediction 350 386 - -
Amo05g0823 546 CDD AP2 258 345 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 ProSiteProfiles AP2/ERF domain profile. 167 223 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 SUPERFAMILY DNA-binding domain 310 345 IPR016177 GO:0003677
Amo05g0823 546 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 PRINTS Ethylene responsive element binding protein signature 325 345 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 544 - -
Amo05g0823 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 544 - -
Amo05g0823 546 MobiDBLite consensus disorder prediction 1 70 - -
Amo05g0823 546 MobiDBLite consensus disorder prediction 479 496 - -
Amo05g0823 546 CDD AP2 167 224 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 SMART rav1_2 259 349 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 SMART rav1_2 167 229 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 MobiDBLite consensus disorder prediction 1 19 - -
Amo05g0823 546 MobiDBLite consensus disorder prediction 474 496 - -
Amo05g0823 546 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Amo05g0823 546 Gene3D AP2/ERF domain 166 225 IPR036955 GO:0003700|GO:0006355
Amo05g0823 546 Gene3D AP2/ERF domain 258 344 IPR036955 GO:0003700|GO:0006355
Amo05g0823 546 ProSiteProfiles AP2/ERF domain profile. 259 343 IPR001471 GO:0003700|GO:0006355
Amo05g0823 546 MobiDBLite consensus disorder prediction 144 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0823 Amo-Chr5 10165754 10169286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0823 1 379 AP2-EREBP Transcription Factor Family AT4G36920 64.010 4.09e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo05g0823 AP2 8.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0823 K09284 - gmx:100801975 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0823 05 10165754 10169286 Amo01g1161 01 16597189 16603161 PCT
Amo05g0823 05 10165754 10169286 Amo11g0790 11 16965440 16969677 PCT
Amo01g1161 01 16597189 16603161 Amo05g0823 05 10165754 10169286 PCT
Amo11g0790 11 16965440 16969677 Amo05g0823 05 10165754 10169286 PCT