Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0815 ATGACAACGGATGGTGCTGGAAGCGCAGATACTCCGATTAGAGGTAATCACGAACTGATAATCGAAATTTCCGACTGCCTTATTACATATATATTATTATCATCATTATGCATTAGGTTCCGTATATATATATATATCATTATCGTTATGTATACATATACATATAATATTAAGTTTTTTTGTGTATGTAGTGGGGAAGTGGAGGCAAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGCTGTAACCCGATGTGGATGTTTGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTKTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGGGTATGGGAAACTTGTTGATTATCTGCGGTCACACAGGAAGATATTTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGAGAGCTTGGGATTAGCATACCTAAGATTTATGAGTCCTTCGCAGCACAACTAGGGGGTTTTAACCTGGTAACATTCACAAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGTACGGACAACCTCTAGGTGCGAGTCACTACACGCCAAACTAGGGAGGTTTGTTGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTGCGTGACACCGAGGATGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTCGTTGAGCTGGAAAAGTCTGGATGGACTATGTTCACCCGCGAAATGTTTCTCAGATACCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTGATGACAGTGACAACCCTCATGCATATACTCTTCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTAGTTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTTTGTGTAAGGCTAGACTTGGTGGAAATCCCTGAAAGCCTGGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGGTGAGCAAGACACTGCTGAACCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGTTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGCGATGAAGACTTCAAGCTTTACTCAAACAAGCTTATGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGCTTAAGACCATTAACGGATAATATGACAACAGCAAATGATTGCGGAGTGAAGGACCCCATTCGTGTCAGGACAAAAGGCACGGCTCGGATGAGTCAAGCAGGCGGTTCTGCGCCGAAAACGAAAAGAAAGTGCAGCGCATGCGGGAAGCTCGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCACAACCTTCACCCAGGAACAAACAATCACTTGCTGGGAGAAATAAACGCAAGCGAACGRAGGTTACCACCTAA 1629 0.4524 MTTDGAGSADTPIRGNHELIIEISDCLITYILLSSLCIRFRIYIYIIIVMYTYTYNIKFFCVCSGEVEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKAVTRCGCLAEMRIKRKEGSGRWYVSRFVEEHNHELGYGKLVDYLRSHRKIFEVEVAQLTSMRELGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIRKQRVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRYRDSLKRCVRVRICEFDDSDNPHAYTLQKYRRPEMNWKVYRDHISNRFSCSCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKLEIHNQCGEQDTAEPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLMSDALFLEIKYGLRPLTDNMTTANDCGVKDPIRVRTKGTARMSQAGGSAPKTKRKCSACGKLGHRRTRCPNGGAQPSPRNKQSLAGRNKRKRTXVTT* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0815 542 Pfam FAR1 DNA-binding domain 72 160 IPR004330 -
Amo05g0815 542 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 66 212 - -
Amo05g0815 542 SMART 26again6 351 378 IPR006564 GO:0008270
Amo05g0815 542 MobiDBLite consensus disorder prediction 482 501 - -
Amo05g0815 542 MobiDBLite consensus disorder prediction 512 542 - -
Amo05g0815 542 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 225 445 - -
Amo05g0815 542 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 225 445 IPR031052 GO:0006355
Amo05g0815 542 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 212 IPR031052 GO:0006355
Amo05g0815 542 SUPERFAMILY Retrovirus zinc finger-like domains 480 518 IPR036875 GO:0003676|GO:0008270
Amo05g0815 542 MobiDBLite consensus disorder prediction 518 542 - -
Amo05g0815 542 ProSiteProfiles Zinc finger SWIM-type profile. 343 376 IPR007527 GO:0008270
Amo05g0815 542 ProSiteProfiles Zinc finger CCHC-type profile. 499 516 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0815 Amo-Chr5 10027632 10032934 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g0815 FAR1 2.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0815 - - adu:107487706 639.417