Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0804 TCAAGGAAAGAGGCCAAACAAAGCAGTACAAGGAAGAATGATGAGATCACTATTACTTCATCAATTTCTGGCACTGATAATAATAATGCGGAGCTTTTAATCCTTGAGTACTCCATTTACAACTTGCTTGCCAGCATTGAGGAACTGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGAAGACGGGCAGCGAGTGATGAACCCTTTAGGACTGACGGAAACTGAGGTTGCAGCATGTATTGGACGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCTGGAGGATTACGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGTCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGATGACGAGTAA 462 0.4545 SRKEAKQSSTRKNDEITITSSISGTDNNNAELLILEYSIYNLLASIEELEDANLPQYEPLEDGQRVMNPLGLTETEVAACIGREIFQTVGEQPQNIDACGICLEDYVHGEELGRLDCAHRYHLSCISQWLLIKNRCPVCKKMALTIIDLEDDE* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0804 153 Pfam Ring finger domain 98 140 IPR001841 -
Amo05g0804 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 66 144 - -
Amo05g0804 153 SMART ring_2 99 139 IPR001841 -
Amo05g0804 153 SUPERFAMILY RING/U-box 98 146 - -
Amo05g0804 153 ProSiteProfiles Zinc finger RING-type profile. 99 140 IPR001841 -
Amo05g0804 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 144 IPR045191 GO:0061630
Amo05g0804 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0804 Amo-Chr5 9843899 9848320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0804 49 144 C3H Transcription Factor Family AT2G15530 38.614 3.36e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0804 - - ahf:114925318 224.942