Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g0803 | ATGGAGAATCTTCCTCCTCCTCATCATCATCCGGGAACAATCACTGTGACTCAGAATCGTGGAAACTCATCATCATCAAGCTTATTCCCCGGTGGGTCTCCTTCAACACGGCTACTCGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTTCTGGATCTGGCGGTGGTCAGAATAATACAGCAGGTACTACCGTTGGAGCTGTTCCTGCAGTTCAGCAGCTGTCGAACGTTGCTCGTGCATGGATTCGAAGGCTGAACGCTCATGATGAGGCCTTGACGAGAACGTCACAATCTTCTACCCCTGATATTACTCCTCACAGGGCACTGCGAGCTTCTCCTATTGCTGAGATGTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGACAAGAGATCCGCACTGCCATTGATCATTTGCGTAATGGAGGTTCCGTCCGACTGGAGGAACTTTTAATTCTTGATTACTCCATTGTGCTGAACTTGCTTGACAACATTGAGGAGGAAGAGGATGATGTTCCGCAGCAGTTTTATGAGTATCTGGGAGACGGGCAGCGAGTGACCAACCCCGATTTAGGACTGACGGAAACTGAGGTTGCAATATGTATTGGACGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGGAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCAATCTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGACGACGAGGACGATGATGAGTGA | 846 | 0.4787 | MENLPPPHHHPGTITVTQNRGNSSSSSLFPGGSPSTRLLESLVQNAGTPSSGSGGGQNNTAGTTVGAVPAVQQLSNVARAWIRRLNAHDEALTRTSQSSTPDITPHRALRASPIAEMYNLPTYFADDSRRLRQEIRTAIDHLRNGGSVRLEELLILDYSIVLNLLDNIEEEEDDVPQQFYEYLGDGQRVTNPDLGLTETEVAICIGREIFQTVGEQPQNIDACGICQEDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPICKKMALTIIDLEDDEDDDE* | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g0803 | 281 | CDD | RING-H2_TTC3 | 223 | 264 | - | - | |
Amo05g0803 | 281 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Amo05g0803 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED | 17 | 268 | - | - | |
Amo05g0803 | 281 | SMART | ring_2 | 223 | 263 | IPR001841 | - | |
Amo05g0803 | 281 | Pfam | Ring finger domain | 222 | 264 | IPR001841 | - | |
Amo05g0803 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 17 | 268 | IPR045191 | GO:0061630 | |
Amo05g0803 | 281 | SUPERFAMILY | RING/U-box | 222 | 271 | - | - | |
Amo05g0803 | 281 | MobiDBLite | consensus disorder prediction | 12 | 36 | - | - | |
Amo05g0803 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 268 | IPR013083 | - | |
Amo05g0803 | 281 | ProSiteProfiles | Zinc finger RING-type profile. | 223 | 264 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g0803 | Amo-Chr5 | 9831681 | 9834424 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g0803 | 134 | 268 | C3H Transcription Factor Family | AT2G15530 | 38.889 | 9.36e-25 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g0803 | - | - | adu:110280903 | 514.612 |