Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0803 ATGGAGAATCTTCCTCCTCCTCATCATCATCCGGGAACAATCACTGTGACTCAGAATCGTGGAAACTCATCATCATCAAGCTTATTCCCCGGTGGGTCTCCTTCAACACGGCTACTCGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTTCTGGATCTGGCGGTGGTCAGAATAATACAGCAGGTACTACCGTTGGAGCTGTTCCTGCAGTTCAGCAGCTGTCGAACGTTGCTCGTGCATGGATTCGAAGGCTGAACGCTCATGATGAGGCCTTGACGAGAACGTCACAATCTTCTACCCCTGATATTACTCCTCACAGGGCACTGCGAGCTTCTCCTATTGCTGAGATGTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGACAAGAGATCCGCACTGCCATTGATCATTTGCGTAATGGAGGTTCCGTCCGACTGGAGGAACTTTTAATTCTTGATTACTCCATTGTGCTGAACTTGCTTGACAACATTGAGGAGGAAGAGGATGATGTTCCGCAGCAGTTTTATGAGTATCTGGGAGACGGGCAGCGAGTGACCAACCCCGATTTAGGACTGACGGAAACTGAGGTTGCAATATGTATTGGACGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGGAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCAATCTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGACGACGAGGACGATGATGAGTGA 846 0.4787 MENLPPPHHHPGTITVTQNRGNSSSSSLFPGGSPSTRLLESLVQNAGTPSSGSGGGQNNTAGTTVGAVPAVQQLSNVARAWIRRLNAHDEALTRTSQSSTPDITPHRALRASPIAEMYNLPTYFADDSRRLRQEIRTAIDHLRNGGSVRLEELLILDYSIVLNLLDNIEEEEDDVPQQFYEYLGDGQRVTNPDLGLTETEVAICIGREIFQTVGEQPQNIDACGICQEDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPICKKMALTIIDLEDDEDDDE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0803 281 CDD RING-H2_TTC3 223 264 - -
Amo05g0803 281 MobiDBLite consensus disorder prediction 1 36 - -
Amo05g0803 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 17 268 - -
Amo05g0803 281 SMART ring_2 223 263 IPR001841 -
Amo05g0803 281 Pfam Ring finger domain 222 264 IPR001841 -
Amo05g0803 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 268 IPR045191 GO:0061630
Amo05g0803 281 SUPERFAMILY RING/U-box 222 271 - -
Amo05g0803 281 MobiDBLite consensus disorder prediction 12 36 - -
Amo05g0803 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 268 IPR013083 -
Amo05g0803 281 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0803 Amo-Chr5 9831681 9834424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0803 134 268 C3H Transcription Factor Family AT2G15530 38.889 9.36e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0803 - - adu:110280903 514.612