LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g0802	ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTTTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCTGCACTTGGTTCCACCCCTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCTCCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCCAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCYAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGTTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTTTGCACCAAGGCAACCCCTTGCACTATGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCGTTTGGGCTGGAACCGCCAATCCTAACACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGTTGCAAAAGAGTTGGAGACAGGAACCATGGTCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGCGATCAATCATCATCAGTGATCATTAGGAATAGTTAA	1131	0.4483	MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTPAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLHYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILTHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQVAKELETGTMVTTSLSFDLQTCEPKDNNPLQICIAGSDQSSSVIIRNS*	377

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo05g0802	376	Pfam	Helix-loop-helix DNA-binding domain	148	194	IPR011598	GO:0046983
Amo05g0802	376	MobiDBLite	consensus disorder prediction	307	324	-	-
Amo05g0802	376	Gene3D	-	139	203	IPR036638	GO:0046983
Amo05g0802	376	MobiDBLite	consensus disorder prediction	300	327	-	-
Amo05g0802	376	Coils	Coil	183	203	-	-
Amo05g0802	376	SMART	finulus	150	199	IPR011598	GO:0046983
Amo05g0802	376	PANTHER	TRANSCRIPTION FACTOR PIF1-RELATED	13	320	IPR031066	-
Amo05g0802	376	MobiDBLite	consensus disorder prediction	28	156	-	-
Amo05g0802	376	CDD	bHLH_AtPIF_like	145	206	-	-
Amo05g0802	376	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	144	193	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g0802	Amo-Chr5	9809979	9813379	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g0802	109	325	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G36930	48.673	3.15e-48	166

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Amo05g0802		HLH	4.3e-14	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g0802	-		-	gmx:100793754	414.846

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