Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0802 ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTTTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCTGCACTTGGTTCCACCCCTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCTCCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCCAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCYAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGTTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTTTGCACCAAGGCAACCCCTTGCACTATGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCGTTTGGGCTGGAACCGCCAATCCTAACACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGTTGCAAAAGAGTTGGAGACAGGAACCATGGTCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGCGATCAATCATCATCAGTGATCATTAGGAATAGTTAA 1131 0.4483 MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTPAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLHYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILTHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQVAKELETGTMVTTSLSFDLQTCEPKDNNPLQICIAGSDQSSSVIIRNS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0802 376 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Amo05g0802 376 MobiDBLite consensus disorder prediction 307 324 - -
Amo05g0802 376 Gene3D - 139 203 IPR036638 GO:0046983
Amo05g0802 376 MobiDBLite consensus disorder prediction 300 327 - -
Amo05g0802 376 Coils Coil 183 203 - -
Amo05g0802 376 SMART finulus 150 199 IPR011598 GO:0046983
Amo05g0802 376 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 320 IPR031066 -
Amo05g0802 376 MobiDBLite consensus disorder prediction 28 156 - -
Amo05g0802 376 CDD bHLH_AtPIF_like 145 206 - -
Amo05g0802 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Amo05g0802 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Amo05g0802 376 MobiDBLite consensus disorder prediction 142 156 - -
Amo05g0802 376 MobiDBLite consensus disorder prediction 49 109 - -
Amo05g0802 376 PANTHER TRANSCRIPTION FACTOR SPATULA 13 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0802 Amo-Chr5 9809979 9813379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0802 109 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 48.673 3.15e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0802 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0802 - - gmx:100793754 414.846