Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g0802 | ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTTTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCTGCACTTGGTTCCACCCCTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCTCCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCCAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCYAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGTTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTTTGCACCAAGGCAACCCCTTGCACTATGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCGTTTGGGCTGGAACCGCCAATCCTAACACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGTTGCAAAAGAGTTGGAGACAGGAACCATGGTCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGCGATCAATCATCATCAGTGATCATTAGGAATAGTTAA | 1131 | 0.4483 | MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTPAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLHYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILTHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQVAKELETGTMVTTSLSFDLQTCEPKDNNPLQICIAGSDQSSSVIIRNS* | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g0802 | 376 | Pfam | Helix-loop-helix DNA-binding domain | 148 | 194 | IPR011598 | GO:0046983 | |
Amo05g0802 | 376 | MobiDBLite | consensus disorder prediction | 307 | 324 | - | - | |
Amo05g0802 | 376 | Gene3D | - | 139 | 203 | IPR036638 | GO:0046983 | |
Amo05g0802 | 376 | MobiDBLite | consensus disorder prediction | 300 | 327 | - | - | |
Amo05g0802 | 376 | Coils | Coil | 183 | 203 | - | - | |
Amo05g0802 | 376 | SMART | finulus | 150 | 199 | IPR011598 | GO:0046983 | |
Amo05g0802 | 376 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 13 | 320 | IPR031066 | - | |
Amo05g0802 | 376 | MobiDBLite | consensus disorder prediction | 28 | 156 | - | - | |
Amo05g0802 | 376 | CDD | bHLH_AtPIF_like | 145 | 206 | - | - | |
Amo05g0802 | 376 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 144 | 193 | IPR011598 | GO:0046983 | |
Amo05g0802 | 376 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 204 | IPR036638 | GO:0046983 | |
Amo05g0802 | 376 | MobiDBLite | consensus disorder prediction | 142 | 156 | - | - | |
Amo05g0802 | 376 | MobiDBLite | consensus disorder prediction | 49 | 109 | - | - | |
Amo05g0802 | 376 | PANTHER | TRANSCRIPTION FACTOR SPATULA | 13 | 320 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g0802 | Amo-Chr5 | 9809979 | 9813379 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g0802 | 109 | 325 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G36930 | 48.673 | 3.15e-48 | 166 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Amo05g0802 | HLH | 4.3e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g0802 | - | - | gmx:100793754 | 414.846 |