Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0797 ATGGACTGGATTCGAGGACCAATCCTCGGCAGTGGAAGCTTCGCCACCGTCAGTTTAGCCACACCCAAGAACCCTTCCCTTTCGTTCCACTTTCCGGCAGCCGTTAAGTCCTCCGATCGTTTGACCTCCTTCTTCCTCGTTAACGAGGAACACGTCCTTGACCGCCTCGGTTCTTCTTGTCCTCGAATAGTTAAGTGCTTGGGCCACGACACCACCGTCGAAAACGGTGAGTCGTTTTACAACATCTTCCTCGAATACGCTTCCAACGGCACGCTCGCTGATCAGATGAAGAAGAATCAAGGTGGGAAGTTCGATGAGAAACAAGTAAGAAGGTACGCGAGGTCCATCATGGAAGGGTTGAAGCACATTCACGAGAATGGGTTCGTTCACTGCGATATTAAGCTTCAGAACATGCTTGTGTTCGAAAACGGCGAGGTGAAGATCTCGGATTTCGGGCTTGCAAAGGAGAAAGGTGCCACGGTGCAGCGTGGAGACAAGAAGTGGGAGTGCAGGGGAACGCCTCTCTACATGTCCCCTGAGTCGGTGAATGATAACGAGTATGAGTCACCGGCGGATATATGGGCCCTTGGATGCGCCGCCGTGGAGATGCTCACCGGAAAGCCAGCGTGGAATGTTAAGAGTGGGTCCAACATGTGGTCGCTGCTAATTCGGATTGGAGTTGGTGAAGAAATTCCGGTGATTCCGGAGGACTTGTCCGAACAGGGGAAGGACTTTTTGAGAAAGTGTTTCGTTAAGGATCCCAGGGAGAGGTGGACGGCGGAGATGCTCCTCAACCACCCGTTTCTCGCCGGTGAAGACAGCCATGATGCTTTGATCCATAACGAAATCTCGCCCAGAAGTAACTTTGACTTTCCTGATTGGGATTACACTTCCACGGTGAATGATTCTGCTGTCACCACTGTTTCCCCGCCTAAGGATTGGTTACCGCAGCTGGTGACGGAGCAGGGGTTGCCGGATTGGTCAGAATCGGAGGGCTGGATAAGTGTTCGGAGAAGAGTTATCGTGGAAGCTTCGTGA 1038 0.5222 MDWIRGPILGSGSFATVSLATPKNPSLSFHFPAAVKSSDRLTSFFLVNEEHVLDRLGSSCPRIVKCLGHDTTVENGESFYNIFLEYASNGTLADQMKKNQGGKFDEKQVRRYARSIMEGLKHIHENGFVHCDIKLQNMLVFENGEVKISDFGLAKEKGATVQRGDKKWECRGTPLYMSPESVNDNEYESPADIWALGCAAVEMLTGKPAWNVKSGSNMWSLLIRIGVGEEIPVIPEDLSEQGKDFLRKCFVKDPRERWTAEMLLNHPFLAGEDSHDALIHNEISPRSNFDFPDWDYTSTVNDSAVTTVSPPKDWLPQLVTEQGLPDWSESEGWISVRRRVIVEAS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0797 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Amo05g0797 345 Pfam Protein kinase domain 7 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0797 345 SUPERFAMILY Protein kinase-like (PK-like) 3 317 IPR011009 -
Amo05g0797 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 307 - -
Amo05g0797 345 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0797 345 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0797 345 CDD STKc_MAPKKK 2 269 - -
Amo05g0797 345 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Amo05g0797 345 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 307 - -
Amo05g0797 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0797 Amo-Chr5 9754004 9755459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0797 1 337 MAP Kinase Kinase Kinase AT5G67080 53.276 2.82e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo05g0797 Pkinase 7.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0797 - - aip:107641670 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0797 05 9754004 9755459 Amo01g1114 01 15240230 15241660 PCT
Amo05g0797 05 9754004 9755459 Amo11g0768 11 15948863 15950353 PCT
Amo01g1114 01 15240230 15241660 Amo05g0797 05 9754004 9755459 PCT
Amo11g0768 11 15948863 15950353 Amo05g0797 05 9754004 9755459 PCT