Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0791 ATGGATGTGGACATATTCAAAACCTCTACTGCTAGTGACAGCATGGACATGATGGCAATGATGATGCAGCAGATGGAAAAGCTTCCTCCTCCTGAATTATCTGAACCTCCTTTTTATACCACCTACCCATCACAAACCGACTTCCATAATAACAATAATGTTGAACCAAACTTGATTAATCCCACTTTCATCTTCCAACAACAACATTCCATGGCACCACCACCTGTAATCACCACCAACAACGATGATATTATTACTTCTTCTTTTCCCTACCCTCCTCCTCCTCCTCCTTCTTGTTCCGATGGCAGCAACAAGAAGAACTCGATGGCTGCCATGAGGGAGATGATATTCCGGGTGGCGGTTATGCAACCGGTTCACATAGACCCGGAGTCTATAAAGCCACCAAAGCGGAGGAACGTGAAGATCTCAAAGGATCCTCAGAGCGTGGCGGCGAGGCACAGGAGGGAGAGGATAAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACTCTTGAACAAGCAGGAGGAGGGAGAATATGTAATAATAATAATGGCTTCACGGGATTCTCATCATCCATTAATGGCAGTAATTATCCTGCTATGGTTAAAGGTTGCCACCAACCTTATCCTCCCATGCTGATGAGTTCTTCTGCTTCAAAACAATTGCTCAGCTGA 756 0.4537 MDVDIFKTSTASDSMDMMAMMMQQMEKLPPPELSEPPFYTTYPSQTDFHNNNNVEPNLINPTFIFQQQHSMAPPPVITTNNDDIITSSFPYPPPPPPSCSDGSNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGRICNNNNGFTGFSSSINGSNYPAMVKGCHQPYPPMLMSSSASKQLLS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0791 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 235 IPR045843 GO:0003700|GO:0006355
Amo05g0791 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 200 IPR036638 GO:0046983
Amo05g0791 251 Pfam Helix-loop-helix DNA-binding domain 152 191 IPR011598 GO:0046983
Amo05g0791 251 SMART finulus 148 197 IPR011598 GO:0046983
Amo05g0791 251 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 235 - -
Amo05g0791 251 Gene3D - 141 204 IPR036638 GO:0046983
Amo05g0791 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Amo05g0791 251 Coils Coil 181 201 - -
Amo05g0791 251 CDD bHLH_AtIND_like 143 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0791 Amo-Chr5 9705613 9706820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0791 17 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 59.296 4.78e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g0791 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0791 - - gmx:100796649 229.95