Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0787 ATGTCTCAAACCTTTGATTACCTGGCTGATTTAAATGCAAGAAAACTGCAATGGAATTTCAAAGTATATGTAATACGAGAAGTTGGCACCATTGAAGTGATTATTGAAGATAGTCAGGGCACAAGGTTGCAAGTCTCGATCCCTAAATCCCTAGTGAGCAAGTGGCGGGGTGTCTTGGTTCAGTTTCAAATGTACATTATGACCAACTTCATTGTTGTTGACAACCAAAAGGGTAACATATCAAGGGGAAAGTATTTATTATTCTTCAGTCATAGGACAATCGTCAGTCATGTTGAGAATCCCAATTTTTCGCTAAATGCTTTTCGATTTAGAACCATCCGTGAGTTACTAAATGCTGAGAAGATCGATGACTCTGCATTGTTTGACATGATTGGTGAAGTAGTTGGTAAAGAAGATCCAAAAGAGTTGATCACCAGCAAAYGAAAGGAGACTAAACGACTGACTGTTATCTTGGAGGACCTAGAAAARAATAGGATTGGGTGCACTATATTTGGTGAAATGGTTGACCAGCTACTTCGTCACATGCAAGATGGAAGGGTTGAGCCACTAATAGTTGTGGTCCAGTATTTTAAGGCAACCAGATGGAATGGCAAGACATCTGTCCAAAGCCATTTTGACATTTCACAGCTGCACATAGACTCCAACCTTAAAGATGTTGCTGAATTTAGGAGCAGGCTYCTTGGCGGTGAACCATCATCCTCTGTGAGGATTAGTCAAGTTCCATCAAAAACAGCTTGGTCAGGGGTTGAGGAGCTTAAACAAGGTGCTGAAGGTCCAGCTTGGATTGCTGCAAGTATTGTTGCGATTAATGTTACGAAGGATGATTGGTTCTATAAATCATGTAGAAAATGTCCAAAGAAAGTAGAAACTCCTATTGGAAACAGATATGAATGTGGGAAGTGTGYCCATACACATGGATCTGCAGCCCTAAGGTTCAAAGTCGAGGTGATGGTTTTTGATGGAACRGGTAGCATCCGATTGCTACTATGGGACAAGGAAACAAGTATGCTATGTGGGAAYAGAGCTGAACAGATTATGGAGGACGATGTTATAGTGGGAGATGAATATCCCAAYACACTTGATAACATGATGGAAAAAAGAGTCKTTTTCAAGATAAATATCAAAGAAGCCAACATTAATCAATTTGATCATGTGTACACGGTTATGAAAATCTGTGATGATGAGGATATCATTGACAAAAATCTTCCCAAAGAGTTGTCTACTAATCTTCCGAGTAATGTCAGTGAAGATGGCTGCAACAACTATTTGGAAATTTCAGAAAATGTGGCTAATCTTAAAACTGARTGTGATACTGAGTCTTCTATGGATGTTGTGGAGGAGTGCATCTCATCCCTCAAGTACAAAACACCATCCAAAAATATTACCAATGGATTGAAGAATTCTCCTCTAAGTCTGAATGAAGATGAGGAAGAAGGCCAGCTATCAACCAACAGGTTCAGTAGGAAGATGGGAAAGAGACAGAAATGTGTTAACCTTGATGCAGATATATGA 1533 0.394 MSQTFDYLADLNARKLQWNFKVYVIREVGTIEVIIEDSQGTRLQVSIPKSLVSKWRGVLVQFQMYIMTNFIVVDNQKGNISRGKYLLFFSHRTIVSHVENPNFSLNAFRFRTIRELLNAEKIDDSALFDMIGEVVGKEDPKELITSKXKETKRLTVILEDLEKNRIGCTIFGEMVDQLLRHMQDGRVEPLIVVVQYFKATRWNGKTSVQSHFDISQLHIDSNLKDVAEFRSRLLGGEPSSSVRISQVPSKTAWSGVEELKQGAEGPAWIAASIVAINVTKDDWFYKSCRKCPKKVETPIGNRYECGKCXHTHGSAALRFKVEVMVFDGTGSIRLLLWDKETSMLCGNRAEQIMEDDVIVGDEYPNTLDNMMEKRVXFKINIKEANINQFDHVYTVMKICDDEDIIDKNLPKELSTNLPSNVSEDGCNNYLEISENVANLKTECDTESSMDVVEECISSLKYKTPSKNITNGLKNSPLSLNEDEEEGQLSTNRFSRKMGKRQKCVNLDADI* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0787 510 Coils Coil 367 375 - -
Amo05g0787 510 Pfam Domain of unknown function DUF223 32 101 IPR003871 -
Amo05g0787 510 Gene3D - 102 239 IPR012340 -
Amo05g0787 510 CDD RPA1_DBD_C 257 398 IPR013955 -
Amo05g0787 510 SUPERFAMILY Nucleic acid-binding proteins 267 400 IPR012340 -
Amo05g0787 510 MobiDBLite consensus disorder prediction 470 484 - -
Amo05g0787 510 Gene3D - 7 100 IPR012340 -
Amo05g0787 510 Pfam Replication factor-A C terminal domain 275 398 IPR013955 -
Amo05g0787 510 Coils Coil 377 387 - -
Amo05g0787 510 PANTHER BNAC07G49340D PROTEIN 117 459 - -
Amo05g0787 510 SUPERFAMILY Nucleic acid-binding proteins 109 233 IPR012340 -
Amo05g0787 510 CDD RPA1_DBD_B_like 129 233 - -
Amo05g0787 510 PANTHER REPLICATION FACTOR A 1, RFA1 117 459 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo05g0787 510 SUPERFAMILY Nucleic acid-binding proteins 5 102 IPR012340 -
Amo05g0787 510 MobiDBLite consensus disorder prediction 470 490 - -
Amo05g0787 510 Gene3D - 241 408 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0787 Amo-Chr5 9663753 9666235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0787 37 337 Core DNA Replication Machinery Family AT2G06510 22.531 2.64e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0787 - - ahf:112803472 778.859