Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0770 ATGGACTTGATTATAAAAATGTTTATTCATTTAGTATCATCGTTGATATCGACACATCTAAAAGTCAACTTTTCCACTATCACTCCCAAAAAACAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGAATTTGAAATCACTGCTTATATACCCRGTATTGGCCATAATTTACAAGAATATTCTGTAGTCTTAGTAAGAGGGAGAAAGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGAAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGTGCATTATAG 318 0.3679 MDLIIKMFIHLVSSLISTHLKVNFSTITPKKQNSALRKVARVRLTSEFEITAYIPXIGHNLQEYSVVLVRGRKVKDLPGVRYHIVRETLDAVGVKDRQQGRSSAL* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0770 105 CDD Ribosomal_S12 26 97 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo05g0770 105 TIGRFAM rpsL_bact: ribosomal protein uS12 23 102 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo05g0770 105 SUPERFAMILY Nucleic acid-binding proteins 24 102 IPR012340 -
Amo05g0770 105 Pfam Ribosomal protein S12/S23 23 100 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PRINTS Ribosomal protein S12 signature 97 105 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PRINTS Ribosomal protein S12 signature 29 44 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PRINTS Ribosomal protein S12 signature 64 81 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PRINTS Ribosomal protein S12 signature 45 64 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PRINTS Ribosomal protein S12 signature 81 97 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 14 104 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo05g0770 105 PANTHER 30S RIBOSOMAL PROTEIN S12-B 14 104 - -
Amo05g0770 105 Gene3D - 11 104 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0770 Amo-Chr5 9297620 9298245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0770 27 86 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 38.235 9.27e-07 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0770 K02950 - twl:119992788 149.058