Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0757 ATGTCACAGAGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATGAGTTGGTGGATGATCGTGCAACGGACGACGTGATTTCGTGGAGTGAGAGTGGCAACACTTTTGTGGTGTGGAAGCATGCCGATTTCGCTAAGGATTTGCTTCCCAATTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGTTTTCGAAAGATTGTGCCAGACAAATGGGAATTTGCCAACGAACATTTTAAGCGAGGCCAAAAAGAACTTCTCACGGAGATCAAACGCCGCAAGTCGGCGCACCCTGCGCCGCCGCCATCGGGGACCGAAAAATCCGGTGGCGACGGTAACTCTCTGTTGAACTCAGGCGGCGACGACATGGGATCGTCCTCCACCTCTTCACCTGATTCGAAGAACCCAGGATCTGTGGAAACAACAACGATAACAACAACAACAACTCCTCCTCCTCATCAGTGCGCGAATTTATCGAGCGAGAACGAGAAATTGAAGAAGGACAACGAGACGCTAAATTGCGAGCTGGCACGTGCGAAGKAGCAGTGCGATGAGTTGGTGGCTTTCTTGAGGGACTGCCTTAAGGTGTGTCCTGATCAGATCAACCGCATCATGAGGCAAGGAAAATGCGGGTCCACCCGTGATCCGGTGCAATCTGATGACACTCTAGTTGATGATGACGAKAAACAAGTTGGTGAGGCCGCTGGACCCAGCACTTTGAAATTGTTTGGTGTTTGGTTGAAAGAGGAGAAGCCTAACAACAACCACAAGAGAGAGCGAGAAGGCCCAATGGGCTTTGGTGGGCCTCCTGCAAAGGAGATGAAGAAGACTACTACTACAGCTAATAGTAATAGTGTTGTTGACTTTGGTGGTTCCAATGTTAAGGTGATGATGAAGAGCAGCAAGGTCTGCAGCTGA 936 0.4989 MSQRSVPAPFLTKTYELVDDRATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLTEIKRRKSAHPAPPPSGTEKSGGDGNSLLNSGGDDMGSSSTSSPDSKNPGSVETTTITTTTTPPPHQCANLSSENEKLKKDNETLNCELARAKXQCDELVAFLRDCLKVCPDQINRIMRQGKCGSTRDPVQSDDTLVDDDXKQVGEAAGPSTLKLFGVWLKEEKPNNNHKREREGPMGFGGPPAKEMKKTTTTANSNSVVDFGGSNVKVMMKSSKVCS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0757 311 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 MobiDBLite consensus disorder prediction 257 295 - -
Amo05g0757 311 MobiDBLite consensus disorder prediction 91 168 - -
Amo05g0757 311 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 287 IPR027725 -
Amo05g0757 311 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Amo05g0757 311 Gene3D - 2 100 IPR036388 -
Amo05g0757 311 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 MobiDBLite consensus disorder prediction 113 165 - -
Amo05g0757 311 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 287 - -
Amo05g0757 311 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g0757 311 Coils Coil 188 188 - -
Amo05g0757 311 MobiDBLite consensus disorder prediction 281 295 - -
Amo05g0757 311 Coils Coil 161 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0757 Amo-Chr5 9141474 9144142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0757 2 311 HSF AT4G36990 48.910 1.41e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo05g0757 HSF_DNA-bind 8.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0757 K09419 - gmx:100791543 358.607