Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0715 AGGCTATTTCTTTCTTTACTCGTTCCTCTCCCTCTCACTCTTGTTGCTTTCTATATATATAAAGAGCATCCATCATTACCAACATATCAGTTAAGAGAGAGAGAGATGGGAAGAGCACCTTGCTGTGACAAAGCGAACGTGAAGAAAGGGCCATGGTCGCCTGAAGAAGACGCGAAACTCAAGTCTTACATCGAGCAGCACGGCACAGGAGGCAATTGGATCGCCCTCCCTCAGAAGATAGGACTTAAGAGATGCGGGAAAAGCTGTCGTCTAAGATGGCTGAATTATCTTCGGCCAAACATTAAACACGGTAGTTTCTCAGAAGAAGAAGACAACATCATCTGCACCCTGTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGACATCAAGAACTACTGGAACACCAGGCTCAAGAAGAAGCTCCTTGCAAAGCAAAGGAAACTAGACCAACCTCCTCCTATTCCTTATTGCAATTCCTCTTCTAATTCTTCTTCTTCTTCTTCAGTTCCACAACTAGTAGTACCACCTGCACCGCCTTCCATCCACGACTACGATCTCACCTCCCTCATATCCTCCTTCCCACAGCAACACCACCTTTATCCACCGCCAAATATGTATCACCATCAGCAAGGCTTTGAAAGCTTATTGATAGATGATGATTTGAGCCATCTCATGGCGTGTGTAGTGAGTAATAATCAACAAATGGAAGTGCAGCAGGGTTTTTATGGCAGCACGACTTCAACAGAGAGCACTACTACTACTAGTTGGGGACCTGATATGACCTCTCTCGTTAACTACTCATCACCACCACCACCACCACCACCTTTGCTTTATCAAGATGACGCTTCACCTGCTTCTAGGTACTTTGGAATGCAAATGCTATAA 918 0.451 RLFLSLLVPLPLTLVAFYIYKEHPSLPTYQLREREMGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGSFSEEEDNIICTLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLAKQRKLDQPPPIPYCNSSSNSSSSSSVPQLVVPPAPPSIHDYDLTSLISSFPQQHHLYPPPNMYHHQQGFESLLIDDDLSHLMACVVSNNQQMEVQQGFYGSTTSTESTTTTSWGPDMTSLVNYSSPPPPPPPLLYQDDASPASRYFGMQML* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0715 305 CDD SANT 105 148 IPR001005 -
Amo05g0715 305 Gene3D - 104 165 - -
Amo05g0715 305 MobiDBLite consensus disorder prediction 253 284 - -
Amo05g0715 305 ProSiteProfiles Myb-like domain profile. 44 97 IPR001005 -
Amo05g0715 305 Pfam Myb-like DNA-binding domain 49 97 IPR001005 -
Amo05g0715 305 Pfam Myb-like DNA-binding domain 104 146 IPR001005 -
Amo05g0715 305 Gene3D - 42 103 - -
Amo05g0715 305 PANTHER OS09G0431300 PROTEIN 36 176 - -
Amo05g0715 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Amo05g0715 305 SUPERFAMILY Homeodomain-like 46 144 IPR009057 -
Amo05g0715 305 MobiDBLite consensus disorder prediction 165 182 - -
Amo05g0715 305 PANTHER OS09G0431300 PROTEIN 36 176 - -
Amo05g0715 305 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Amo05g0715 305 SMART sant 102 150 IPR001005 -
Amo05g0715 305 SMART sant 48 99 IPR001005 -
Amo05g0715 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 97 IPR017930 -
Amo05g0715 305 MobiDBLite consensus disorder prediction 159 183 - -
Amo05g0715 305 CDD SANT 51 97 IPR001005 -
Amo05g0715 305 MobiDBLite consensus disorder prediction 253 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0715 Amo-Chr5 8664269 8665303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0715 36 158 MYB Transcription Factor Family AT3G49690 92.683 2.97e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g0715 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0715 K09422 - gmx:106795158 256.914