Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0704 ATGAGTCGCAGTTCGTGGTTGCATGCAAATAACTCTGCATCATCATCATCAACCACTAACAATAATAAGAAGCTCAAGGGTGTTAGGCGTCGAAAGTGGGGCAAGTATGTGTCGGAGATTCGTGTTCCGGGCACCCAAGAGCGTCTCTGGTTGGGAACCTACGCCACGCCGGAAGCAGCTGCGGTGGCTCACGACGTCGCCGTTTATTGCCTGAAGAAACCTTCTTCATTGGAGAAGCTTAACTTCCCTGACACCTTGTCTTCTTATCATCACTGTCTTCAGCAGAGAGAGGATTTGTCACCAAGGTCCGTTCAGAAGGTCGCTTCAGATGTTGCCATGGATGTTGATGCGCGCAACATTAATGGGAGATCAACAACGCTCGCTACCACCACCAATACTGTCGCAGTCACAGAAACTAGCAGTGGTAGTTATTGTTCCGAGGTGTTACTTGAAACTGGCGTAGGTATGAACAGTTATGATGTTGGATTTGGAGGAGATTCTTGGTGGCAAGGTTTGGGTGATCGTAATGGTGAAACAGCTTTCCATGAAAGTAGTAGTGAAGATCATCATCATGGTGGTGGACAAGGGGATCCACCATTGAGCATTTCTGTTGAAGATTATCTTTAG 627 0.4737 MSRSSWLHANNSASSSSTTNNNKKLKGVRRRKWGKYVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKKPSSLEKLNFPDTLSSYHHCLQQREDLSPRSVQKVASDVAMDVDARNINGRSTTLATTTNTVAVTETSSGSYCSEVLLETGVGMNSYDVGFGGDSWWQGLGDRNGETAFHESSSEDHHHGGGQGDPPLSISVEDYL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0704 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 MobiDBLite consensus disorder prediction 180 194 - -
Amo05g0704 208 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g0704 208 ProSiteProfiles AP2/ERF domain profile. 24 83 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 MobiDBLite consensus disorder prediction 1 23 - -
Amo05g0704 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 130 - -
Amo05g0704 208 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Amo05g0704 208 Pfam AP2 domain 24 72 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 CDD AP2 23 58 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 SMART rav1_2 24 89 IPR001471 GO:0003700|GO:0006355
Amo05g0704 208 SUPERFAMILY DNA-binding domain 24 84 IPR016177 GO:0003677
Amo05g0704 208 MobiDBLite consensus disorder prediction 174 208 - -
Amo05g0704 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 10 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0704 Amo-Chr5 8478655 8479367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0704 21 117 AP2-EREBP Transcription Factor Family AT1G71520 58.586 9.55e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g0704 AP2 2.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0704 - - adu:107488358 387.497