Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0686 ATATTCTGTTGTCTCCTGACACCGCTAATAACCTTATATGGTAATTTCCTAAGGAATTGGCAATTTCTAAGAAGAAAAATGGAATTTAGCTTAGGGTATGTCCTAAAAATGCCACCTAAGAATCCACAAGTAGAGATAAATGTGCAATCTACTTTTGGAGAAGAAGGATCATCTTCTGTAACTTCGTCACCCCTTCAATTCTTCTCGATGATGTCACTGTCACCTAGCATAGGATCTCCATACACATGGCTAAGAGAGCTGAAATCAGAGGAAAGGGGATTGGCCTTGATCCATTTGTTGCTGACTTGTGCAAACCATGTGGCTGCTGGTAGTCTTGAGAATGCAAATGTAATGCTTGATCAAATTTCCCAGTTAGCTTCCCCTGATGGCGACACTATGCAAAGAATCGCCGCATACTTCAATGAAGCGCTGGCCGATAGGATACTCAAGACATGGCCTGGCCTCCACAGGGCCCTCAATTCCACCAGGATTGTCATGGTTTCGGAAGAAATTCTTGTCCAAAAGCTCTTTCTGGAGCTTTTTCCGTTCTTGAAGGTGTCATATATACTGACAAATCAGGCTATTGTTGAAGCAATGGAAGGAGAGAAAATGGTGCACATAATTGATCTCAATGCTGCCGAACCTGCGCAGTGGATTGCTCTCCTCCAAGTTTTTAGCGCACGCCCTGAAGGCCCTCCTCATCTGAGAATTACCGGGGTTCATCACCAAAAAGAGATTCTAGAGCAGATGGCTCACAAGCTTACTGAAGAAGCAGAAAAGTTGGATATCCCCTTCCAATTCCATCCTGTAGTCAGCAAATTAGAGAATCTTGATTTTGATAAGCTTCGCGTGAAAACCGGAGAAGCATTAGCAATAAGTTCTATTCTGCAATTGCATTCCCTTTTAGGCCTGGATGATGAGGCCTTGCGAAGAAGATCTCCTCTTTTGTCGAAAAACTCGAACGGAATTCACCTGCAGAAAGCCTTGCTGATGAATCAAAGCACATTAGGTGATTTGCTTGAGAAAGATACAGTGAATGGCTACAGTCCAAGTCCTGACTCGGCCTCATCCTCGCCGGTTTCTTTAACAGCTTCAATGACTGCAGAGAGCTTTCTCAATGCCCTATGGGGATTATCACCAAAAGTGATGATTGTGACAGAACAAGACTCTAATCATAATGGTTCAACCCTGATGGAGAGAGTACTAGAAGCTCTGTATTCTTATGCAGCATTGTTCGATTGTTTGGAATCCACTGTCTCTAGGACATCAGTGGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAAGAAATCAAGAATATCATTGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGCTAGATAAGTGGATCCAGAGACTGGATTTGTCCGGGTTTGGCAATGTGCCGTTGAGCTATTACGGCATGTTGCAGGCGCGGAGATTCCTGCAGAGCTGTGGTTGTGAGGGATACAAGATGAGGGATGAGAATGGTTGTGTAGTAATTTGCTGGCAGGATAGACCTTTGTTTTCAATATCTGCTTGGAGATCTAGGAAGTGA 1566 0.4368 IFCCLLTPLITLYGNFLRNWQFLRRKMEFSLGYVLKMPPKNPQVEINVQSTFGEEGSSSVTSSPLQFFSMMSLSPSIGSPYTWLRELKSEERGLALIHLLLTCANHVAAGSLENANVMLDQISQLASPDGDTMQRIAAYFNEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFLELFPFLKVSYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVFSARPEGPPHLRITGVHHQKEILEQMAHKLTEEAEKLDIPFQFHPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLGLDDEALRRRSPLLSKNSNGIHLQKALLMNQSTLGDLLEKDTVNGYSPSPDSASSSPVSLTASMTAESFLNALWGLSPKVMIVTEQDSNHNGSTLMERVLEALYSYAALFDCLESTVSRTSVERLKVEKMLFGEEIKNIIACEGAERRERHEKLDKWIQRLDLSGFGNVPLSYYGMLQARRFLQSCGCEGYKMRDENGCVVICWQDRPLFSISAWRSRK* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0686 521 PANTHER SCARECROW-LIKE PROTEIN 3 54 520 IPR030008 GO:0003700|GO:0005634|GO:0009739
Amo05g0686 521 ProSiteProfiles GRAS family profile. 87 518 IPR005202 -
Amo05g0686 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 520 IPR005202 -
Amo05g0686 521 Pfam GRAS domain family 96 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0686 Amo-Chr5 8273077 8277046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0686 54 521 GRAS Transcription Factor Family AT1G50420 68.973 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g0686 GRAS 2e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0686 - - tcc:18589932 779.245