Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0683 ATGGGATCAATGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCGTCACCCCTTCAATTCTTCTCGATGATGTCACTGTCACCTAGCATAGGATCTCCATACACATGGCTAAGAGAGCTTAAATCAGAGGAAAGGGGATTGGCCTTGATCCATTTGTTGCTGACTTGTGCAAACCATGTGGCTGCTGGTAGTCTTGAGAATGCAAATGTAATGCTTGATCAAATTTCCCAGTTAGCTTCCCCTGATGGCGACACTATGCAACGAATCGCCGCATACTTCAATGAAGCGCTGGCCGATAGGATACTCAAGACATGGCCTGGTCTCCACAGGGCCCTCAATTCCACCAGGATTGTCATGGTTTCAGAAGAAATTCTTGTCCAAAAGCTCTTTCTGGAGCTTTTCCCGTTCTTGAAGGTGTCATATATACTGACAAATCAGGCTATTGTTGAAGCAATGGAAGGAGAGAAAATGGTGCACATAATTGATCTCAATGCTGCCGAACCTGCGCAATGGATTGCTCTCCTCCAAGTTTTTAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACCGGGGTTCATCACCAAAAAGAGATTCTAGAGCAGATGGCTCACAAGCTTACTGAAGAAGCAGAAAAGTTGGATATCCCCTTCCAATTCCATCCTGTAATCAGCAAATTAGAGAATCTTGATTTTGACAAGCTTCGGGTGAAAACCGGAGAAGCATTAGCAATAAGTTCTATTCTGCAATTGCATTCCCTTTTAGGCCTGGATGATGAGGCCTTGCGAAGAAGATCTCCTCTTTTGTCGAAAAACTCAAACGGAATTCACCTGCAGAAAGCCTTGCTGATGAATCAAAGCACATTAGGTGATTTGCTTGAGAAAGATACACTGAATGGCTACAGTCCAAGTCCTGACTCGGCCTCATCCTCGCCGGTTTCTTTAACAGCTTCAATGACTGCAGAGAGCTTTCTCAATGCCCTATGGGGATTATCACCAAAAGTGATGATTGTGACAGAACAAGACTCTAATCATAATGGTTCAACCCTGATGGAGAGAGTACTAGAAGCTCTGTATTCTTATGCGGCATTGTTCGATTGTTTGGAATCCACTGTCTCTAGGACATCAGTGGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAAGAAATCAAGAATATCATTGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGCTAGATAAGTGGATCCAGAGACTGGATTTGTCCGGGTTTGGCAATGTGCCGTTGAGCTATTACGGCATGTTGCAGGCGCGGAGATTCCTGCAGAGCTGTGGTTGTGAGGGATACAAGATGAGGGAGGAGAATGGTTGTCTAGTAATTTGCTGGCAGGATAGACCTTTGTTTTCAATATCTGCTTGGAGATCTAGGAAGTGA 1425 0.4449 MGSMFQEEGSSSVTSSPLQFFSMMSLSPSIGSPYTWLRELKSEERGLALIHLLLTCANHVAAGSLENANVMLDQISQLASPDGDTMQRIAAYFNEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFLELFPFLKVSYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVFSARPEGPPHLRITGVHHQKEILEQMAHKLTEEAEKLDIPFQFHPVISKLENLDFDKLRVKTGEALAISSILQLHSLLGLDDEALRRRSPLLSKNSNGIHLQKALLMNQSTLGDLLEKDTLNGYSPSPDSASSSPVSLTASMTAESFLNALWGLSPKVMIVTEQDSNHNGSTLMERVLEALYSYAALFDCLESTVSRTSVERLKVEKMLFGEEIKNIIACEGAERRERHEKLDKWIQRLDLSGFGNVPLSYYGMLQARRFLQSCGCEGYKMREENGCLVICWQDRPLFSISAWRSRK* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0683 474 PANTHER SCARECROW-LIKE PROTEIN 3 5 473 IPR030008 GO:0003700|GO:0005634|GO:0009739
Amo05g0683 474 Pfam GRAS domain family 49 471 IPR005202 -
Amo05g0683 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Amo05g0683 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0683 Amo-Chr5 8253747 8256192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0683 1 474 GRAS Transcription Factor Family AT1G50420 69.008 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g0683 GRAS 4.3e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0683 - - tcc:18589932 781.171