Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0681 ATGAGTTGCAACGGGTGCCGAGTCCTTAGGAAGGGTTGCAGCGAGTCATGCATCTTAAGGCCATGCCTTCAGTGGATCGAAACCGCCGAGGCCCAAGGCCACGCCACCGTCTTCGTGGCCAAATTCTTTGGTCGCGCCGGCCTCATGTCCTTCATTTCCAATGTCCCTGAGCCCCAAAGACCTGCTCTTTTTCAGTCTTTACTTTTCGAAGCATGTGGACGAACGGTTAACCCGGTTAACGGTGCCGTTGGACTACTGTGGACTGGAAACTGGCACGTGTGCCAGGCCGCCGTTGAAACGGTGCTTCGAGGAGGCTCCCTCAGGCCTATGCCGGAGCTACTCGGTCTCGACGCGCCTGTTCCTGTCGCTGTTGACGCCGGCTCCGAGGGGGAAGTCACGTGCGCTGACGCGCGGAAGCTCCGAGATCCGAACCCGAGTCCGAACATAAGGTTCACGAGCTCCCGATCTGGTAAAGATAGTTCCGGCGGGAAACGGAAGCGATCGGAGGAGTTGATGATGACGACGGCGGACCTTAACCTTCGGCTGACGCCGAGTGCCGTGCATAGCGGTTGCCGGCAGGAAATTCGGCGGCCGGGAACGCCGTCGATGAATTCGGAGGAATCGGTGACGACGATGGCGTGCTTGGAGAGCGGACTCGGAGATAACTACGCTCACGGCGGAGACCGGAAAGTCCTCAACCTTTTCATCTGA 711 0.5879 MSCNGCRVLRKGCSESCILRPCLQWIETAEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGSLRPMPELLGLDAPVPVAVDAGSEGEVTCADARKLRDPNPSPNIRFTSSRSGKDSSGGKRKRSEELMMTTADLNLRLTPSAVHSGCRQEIRRPGTPSMNSEESVTTMACLESGLGDNYAHGGDRKVLNLFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0681 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Amo05g0681 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Amo05g0681 236 MobiDBLite consensus disorder prediction 138 170 - -
Amo05g0681 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Amo05g0681 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0681 Amo-Chr5 8155350 8157243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0681 1 236 AS2 family AT4G37540 58.964 2.09e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo05g0681 LOB 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0681 - - gmx:100816189 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1286 01 20871237 20872804 Amo05g0681 05 8155350 8157243 PCT
Amo11g1017 11 29582127 29583335 Amo05g0681 05 8155350 8157243 PCT