Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0680 GCTCACACTGAGGCGCATTCCAATCAGCGACTCGCCCGGAAGCTTCCTCAGACTGCAAGATGCTCGCACGCTGTAGCTGCACGCCCTGCTAACCGTAACAGCCTCGCCATCGAACCGCACAGATTCTCTCTGATCGACGCCATCGCTGGCCGCCACGAGGTGCCTCCTGTAATCAAGCTCACGGTTCCCGGTGCCGCCTTCAGAGAAGGTAACATCAATATCCCTCCAATACTCGATCTTTCTTACGAGGAATTAGGCGCGAAGTTGGTCAACTTCGCTAGGTCGAAGAACGTGGTCATGGAATTCAGCGTTGTTCTTCGAGCGGTTCGGAGTTTGGAACCTACAATTATGGTTTTGGTAGATGAGGACGTGGATTTGATATCAAATAACTTGGTGTGTAGGCTAAGGTCTGCGTTCAATTATCTGTGGATACCGTACGACACGGTGGACACGTTCCTTCCTCGAGGCAGCAAGCAAAGGCAGTGGTATGAACTGACATACCCAAGAAGCAATGGCAGCACAAGGTTGAGAAATGCGAGCTTCCATGGGATTGGATTCAGTGAGGAATCGATTTCTGAGGTGAAGGGGATGCTGGATGAACATGCTGCTGGTTGGGGTGTTGAAGAAGTGACAATCTTCTTCCACGGAAAGGCCAATAATGTTATCTTTGCTTCAGCTTGGTTACCTGCTTAG 693 0.5065 AHTEAHSNQRLARKLPQTARCSHAVAARPANRNSLAIEPHRFSLIDAIAGRHEVPPVIKLTVPGAAFREGNINIPPILDLSYEELGAKLVNFARSKNVVMEFSVVLRAVRSLEPTIMVLVDEDVDLISNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYELTYPRSNGSTRLRNASFHGIGFSEESISEVKGMLDEHAAGWGVEEVTIFFHGKANNVIFASAWLPA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0680 230 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 228 IPR005202 -
Amo05g0680 230 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 164 IPR005202 -
Amo05g0680 230 ProSiteProfiles GRAS family profile. 1 228 IPR005202 -
Amo05g0680 230 Pfam GRAS domain family 105 165 IPR005202 -
Amo05g0680 230 PANTHER SCARECROW-LIKE PROTEIN 32 173 228 - -
Amo05g0680 230 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 106 IPR005202 -
Amo05g0680 230 PANTHER SCARECROW-LIKE PROTEIN 32 44 106 - -
Amo05g0680 230 PANTHER SCARECROW-LIKE PROTEIN 32 104 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0680 Amo-Chr5 8069996 8071168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0680 43 229 GRAS Transcription Factor Family AT3G49950 34.340 5.20e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g0680 GRAS 9.1e-10 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0680 - - ming:122083722 214.157