Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0669 ATGTTTTTCGAAAATGTTTCTTCCTCAGTTGCTGGCCTTAGGGATCACAGAGAAGCTTCTATCATGCTCCCAATTAACAATAATAACGCTGGTGTTGAAATAATTTACATCAGTGACGACGAAGAACCAGATCTTGAATCATCATTGTTAGAGAGCCGCAGTGACATTCAACATCTGCCTAATGGAGACTCCGTTCGAGAACTCGAGGAGCTTCTAATCCTTGATTACTCCAACTTGGTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCGGCAATATGAGCCTCTGGGAGACGGGCAGCGAGTGACGAACCCCAATTTAGGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGGAGGACTATGTTCACGGTGAAGAGCTTGGAAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCTGTTTGCAAGAAAATGGCTCTCACCATTATAGACTTGGAG 564 0.461 MFFENVSSSVAGLRDHREASIMLPINNNNAGVEIIYISDDEEPDLESSLLESRSDIQHLPNGDSVRELEELLILDYSNLVASIEEEEDANLRQYEPLGDGQRVTNPNLGLTETEVAACIGREIFQTVGEQPQNIDACGICQEDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0669 188 Pfam Ring finger domain 136 178 IPR001841 -
Amo05g0669 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 34 182 - -
Amo05g0669 188 SMART ring_2 137 177 IPR001841 -
Amo05g0669 188 SUPERFAMILY RING/U-box 136 183 - -
Amo05g0669 188 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Amo05g0669 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 34 182 IPR045191 GO:0061630
Amo05g0669 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 182 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0669 Amo-Chr5 7905423 7907602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0669 90 182 C3H Transcription Factor Family AT2G15530 40.206 1.73e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0669 - - ahf:114925318 366.311