Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0655 ATGGACTCTTCCAAGAGTGCAGTTAAGGCAGTGCAGGTCAAAGCTCGCCATATGGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGTCATACATCACTGAAAATATAATTGCTATGGGATTTCCAGGCGGTGATATTAGCTCCGGAATTTTCGGATACATTGAGGGGTTCTATCGGAATCACATGGAAGAAGTAATCAAATTCTTTGAAACTCACCATAAGGGAAAGTACAAAGTATACAATCTTTGTGCAGAGAGGTTATATGATGGATCGCTATTCCAGGGGAAGGTTGCGACTTTCCCGTTTACAGATCATAATTGCCCTCCTATTCAACTTATAGCCTCATTTTGTGAAAGTGCACATTCATGGTTGAAGGAGGATATTCAAAATGTAGTAGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGATTAATGATTTGCAGCCTTCTTTTATTTCTGAAGTTCTTCCCAACTGCAGAGGAAGCCATAGATTACTTCAACCAGAAAAGATGTATAGATGGAAAGGGCTTAACTCTTCCTAGTCAAATCAGATATGTCAAATATTTTGAACGGACTTTGAAACAATTCRAYGGCGAAGTCCCACCTGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCATAATTGCCCTTATTGGGTTAGGCCATCAATTACAATATCTGATCATAGTGGAATTCTATTCAGCACGAAAAAGCATCCAAAGACAAAGGATCTAATGCCCGAAGATTTCTGGATCAGTATACGGAAGAAAGGAGTAGTAGTTTTTGCACTACCGGGGGAGCCTGGTTTGACAGAGTTGGTTGGGGACTTCAAAATTCACTTCAATGATGGGCAGGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAACCATTTTAGATGGCTCGGATCTCGATGGCTTTGACAAGAGAAAGATCCCCACTCCAGGATTCCAGGTCGAGGTTGTGATGGTCGACTATGATGGCACCGTACCAGCAAGAACCAAAGCCGGTCCTGCCAGCACAGAACCCGAAGGCAACACAAACAAGGTCCAAGCTGGTGCAAAACTTGCGTCGAAGAGCAAGGTCCCTAAGAATGGAGATGATGATGATGTATTCTCAGATAGTGATGAAGAGAAGGATAGACAGAGCGGAAAATCTGAAACTGAATATAAGTTAGCGGCACCTCAAGGATCTGGGGATACTTCAGACCATGTAGGAGTGTTGACACATTCAACGAATCAGTTGCGCCTGCATGAGGAACGTAAGCAAAACAATGCTTCTCAAGAATCAACAACAGATAATAATATTCATGCATCCGGTAACACCACCAACATAGAGTCTGTAGGGGCAAGTGAAATCAAGGCAATTGCTGCAGATGCTTCGGTTTTTGCTTTTGGAGATGAAGATTTTGAAAGTGATTGA 1455 0.422 MDSSKSAVKAVQVKARHMVSQNKRRYQEDGFDLDMSYITENIIAMGFPGGDISSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCAERLYDGSLFQGKVATFPFTDHNCPPIQLIASFCESAHSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNQKRCIDGKGLTLPSQIRYVKYFERTLKQFBGEVPPGRRCMLRGFRLHNCPYWVRPSITISDHSGILFSTKKHPKTKDLMPEDFWISIRKKGVVVFALPGEPGLTELVGDFKIHFNDGQGDFYCWMNTTMTENRTILDGSDLDGFDKRKIPTPGFQVEVVMVDYDGTVPARTKAGPASTEPEGNTNKVQAGAKLASKSKVPKNGDDDDVFSDSDEEKDRQSGKSETEYKLAAPQGSGDTSDHVGVLTHSTNQLRLHEERKQNNASQESTTDNNIHASGNTTNIESVGASEIKAIAADASVFAFGDEDFESD* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0655 484 SMART PTEN_C2_2 208 336 IPR014020 -
Amo05g0655 484 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 200 IPR029021 -
Amo05g0655 484 ProSiteProfiles C2 tensin-type domain profile. 210 337 IPR014020 -
Amo05g0655 484 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 1 484 - -
Amo05g0655 484 MobiDBLite consensus disorder prediction 341 463 - -
Amo05g0655 484 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 177 IPR000387 GO:0016311|GO:0016791
Amo05g0655 484 ProSiteProfiles Phosphatase tensin-type domain profile. 24 203 IPR029023 -
Amo05g0655 484 MobiDBLite consensus disorder prediction 351 365 - -
Amo05g0655 484 Pfam Protein-tyrosine phosphatase 110 162 IPR000242 GO:0004725|GO:0006470
Amo05g0655 484 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 484 - -
Amo05g0655 484 MobiDBLite consensus disorder prediction 438 460 - -
Amo05g0655 484 CDD PTP_PTEN 34 198 IPR045101 GO:0016791
Amo05g0655 484 Gene3D Protein tyrosine phosphatase superfamily 9 206 IPR029021 -
Amo05g0655 484 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0655 Amo-Chr5 7774190 7781030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0655 1 484 Protein tyrosine phosphatase (PTP) family AT3G19420 65.244 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0655 K01110 - gmx:100801622 794.267