Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0653 ATGCCTCGGGGGGTGGGGGGAACCGGTTCCGTACAGCTCTCCCCACAGGTGGAGCATCGGGCCTTCACCCCCGAAGAGGACGATACCATAATCAGAGCTCACGCTCGGTTCGGCAACAAGTGGGCCACTATAGCCCGACTCCTCTCCGGCAGAACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGACCCTCACTTTGCTCAGCCACTCAAACGCTCCGTCAGCGCCGGCGCCGCCGTACCCGTATCAACGGGCCTCTACATGAACCCTCCCACACCCGGAAGCCCCTCCGGATCCGATGTGAGCGAGTCAAGCGTCCCCGCTGCCTCCACATCGCACGTTTTCCGACCTGTGCCTAGAGCCGGCGGTGTCGTACCGCCGGTAGAAACGACGTCGTCTTCCTATGACCCTCCCACTTCATTGTCCCTTTCCCTCCCCGGGGTTGACTCTAATTCGGAAGTCTCGAATCGTGGCAACGAACCGTCGCCTCACTCGGCGCCGCCGTTGACTGCCATACCTCTGTTGCCAATAATGTCGGCTGCTGTATCCGCGACGGTGGCGGCCGTTCCAGCGGTAACTGCCACAGCTCCAGGTACTGCTCCGTTGGCTGCACAGCCGTTACAGCAAATTCGCGATCCATCGGCTGTGGCTGCGGTGCCGAAGCAGAATAATGGAGCGGCTCCGTTCAACTTTAGTGCTGAGCTTTTGGCGGTGATGCAAGATATGATAAGGAAGGAAGTGAGGAGTTATATGGCTGGATTAGAGCAGCAAAGTAACAATAATGGGATGTGTTTTCAGGCTGCTGATGGTGGCTTTAGGAACGCTTCCGTTAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 903 0.5792 MPRGVGGTGSVQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMGPIDDPHFAQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPAASTSHVFRPVPRAGGVVPPVETTSSSYDPPTSLSLSLPGVDSNSEVSNRGNEPSPHSAPPLTAIPLLPIMSAAVSATVAAVPAVTATAPGTAPLAAQPLQQIRDPSAVAAVPKQNNGAAPFNFSAELLAVMQDMIRKEVRSYMAGLEQQSNNNGMCFQAADGGFRNASVKRIGISRIDS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0653 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 68 IPR017930 -
Amo05g0653 300 MobiDBLite consensus disorder prediction 101 124 - -
Amo05g0653 300 CDD SANT 21 64 IPR001005 -
Amo05g0653 300 PANTHER MYB PROTEIN-RELATED 12 266 - -
Amo05g0653 300 SUPERFAMILY Homeodomain-like 13 68 IPR009057 -
Amo05g0653 300 SMART sant 18 66 IPR001005 -
Amo05g0653 300 Gene3D - 21 84 - -
Amo05g0653 300 MobiDBLite consensus disorder prediction 140 176 - -
Amo05g0653 300 MobiDBLite consensus disorder prediction 98 180 - -
Amo05g0653 300 Pfam Myb-like DNA-binding domain 21 63 IPR001005 -
Amo05g0653 300 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 12 266 - -
Amo05g0653 300 ProSiteProfiles Myb-like domain profile. 14 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0653 Amo-Chr5 7720691 7723008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0653 12 299 MYB Transcription Factor Family AT4G37260 42.949 4.22e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g0653 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0653 K09422 - gmx:780556 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1203 01 18038679 18040385 Amo05g0653 05 7720691 7723008 PCT