Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0640 ATGTGCAAACACCACTATCATCAGTTCATCACACAGCACAAGCCACAGTCGAGAGTGAGAGAACCTTTTCAGTGTTTACACGGCTTCAAACCGCCACTTGTTTTATTCTCTATCTCTCGACGCCACCGCCACAATCAGCATGCCACCCCAACAACCCCTCCTGGAGCCAGAAGAGGACACGGCCTACGACTCCTCCGAGAAGGTGGTGGTGGCGGTGGTGAGGATGAGTACGGCGATGACGTGGAGGCGCCGCCCTTCTCGTGGAAGAAACTGTGGCTGTTCACTGGGCCGGGGTTCTTGATGAGCATAGCGTTTCTTGACCCAGGGAACTTGGAGGGGGATCTTCAGTCGGGTGCGATTGCAGGATACTCGCTGCTCTGGCTGCTCATGTGGGCCACGCTAATGGGCCTTCTGATTCAGCTGCTTTCGGCCAGGCTCGGGGTGGCCACAGGGCGGCACCTGGCTGAGCTGTGCAGGGAGGAGTACCCGCCATGGGCCAGGATTGTGTTGTGGCTCATGACTGAGTTGGCTCTTATTGGCTCCGACATACAAGAGGTTATTGGCAGCGCTATTGCTATCCGGATTCTCAGTAACGGATTTGTTCCTCTATGGGCTGGTGTCGTCATTACTGCTCTTGATTGTTTTTTTTTCTTTCTCGAGAACTATGGTGTGAGGAAATTGGAGGCATTTTTTGCTGTTCTGATTGGCATAATGGCGCTCTCATTTGCATGGATGTTCGGTGAAGCAAAACCCAATGGGGTTGATGTTCTTCTTGGTGTTTTGGTTCCTAAACTTAGCTCCAGAACTATAAAGCAAGCTGTTGGAGTTGTTGGTTGCATCATTATGCCTCACAACGTGTTCTTGCATTCCGCTCTCGTTCAGTCAAGGCAGATTGATCAAAGCAAGAAAGGCCGCGTTCAAGAAGCTCTTAATTACTACTCCATAGAGTCCACCTTGGCCCTTGCAGTCTCTTTCATCATCAATATTTTCGTCACGACTGTGTTTGCCAAGGGCTTTTACGGTACTGAAATAGCCGATAGTATTGGTCTTGTAAATGCAGGGACTTATCTTCAGGAGAAATATGGGGGTGGATTATTCCCAATCCTATATATATGGGGCATTGGTTTGTTAGCAGCAGGGCAAAGTAGCACTATAACTGGTACATATGCTGGGCAATTCATCATGGGAGGTTTTCTCAATTTAAGGCTGAAGAAATGGGTGAGGGCGTTAATTACCCGATGCTGCGCAATCATCCCAACCATGATAGTCGCTCTTATCTTTGATACCTCGGAGGAATCTTTAGATATCCTGAATGAATGGCTTAATGTTCTTCAGTCAGTTCAAATCCCATTTGCTCTTATTCCCTTGCTTTGCTTGGTGTCCAAGGAACAGATAATGGGCACTTTCAGAATTGGTCCTGTCCTCAAGATTTTTTCTTGGCTGGTGGCTGCTCTGGTGATAGTGATCAATGGCTATCTTTTGCTAGACTTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTGCCGTTGTAGTGTGTGCACTAACAGCTGCTTATGTTGCATTTGTAATATACCTTATTGCGCGTGCTGTTTCCTTTTCTCCTTGGCAAAGTTTAGATCGATCAAAGGCAACTAGCACAGAGAACTGA 1647 0.4784 MCKHHYHQFITQHKPQSRVREPFQCLHGFKPPLVLFSISRRHRHNQHATPTTPPGARRGHGLRLLREGGGGGGEDEYGDDVEAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARLGVATGRHLAELCREEYPPWARIVLWLMTELALIGSDIQEVIGSAIAIRILSNGFVPLWAGVVITALDCFFFFLENYGVRKLEAFFAVLIGIMALSFAWMFGEAKPNGVDVLLGVLVPKLSSRTIKQAVGVVGCIIMPHNVFLHSALVQSRQIDQSKKGRVQEALNYYSIESTLALAVSFIINIFVTTVFAKGFYGTEIADSIGLVNAGTYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRCCAIIPTMIVALIFDTSEESLDILNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGPVLKIFSWLVAALVIVINGYLLLDFFSSEVNGAVFAVVVCALTAAYVAFVIYLIARAVSFSPWQSLDRSKATSTEN* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 442 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 170 196 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 224 245 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 380 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 273 296 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PRINTS Natural resistance-associated macrophage protein signature 408 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 Hamap Divalent metal cation transporter MntH [mntH]. 78 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 73 546 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 Pfam Natural resistance-associated macrophage protein 112 472 IPR001046 GO:0016020|GO:0030001|GO:0046873
Amo05g0640 548 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 73 546 - -
Amo05g0640 548 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 89 466 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0640 Amo-Chr5 7531207 7534508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0640 74 535 Inorganic Solute Cotransporters AT2G23150 78.936 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0640 K21398 - gmx:100789871 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0640 05 7531207 7534508 Amo11g0848 11 19662407 19664989 PCT
Amo11g0848 11 19662407 19664989 Amo05g0640 05 7531207 7534508 PCT