Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0627 ATGGTGTATCTCGCCGGGTACCGCACGGTCATAGGATTCCATCACCGGAGCCCAATTTCTTTGATATCGATAACACAAAACGGCGCCACTATAACGCCCTACGACGTCGTATTTCTGTGTCGTTGTTGCAGATACCATCGGTTCAGTAGTGCATCTGAATCTTCTTGGGAAGAATTCCCCGTGGAGAACGCGTACGAGCTGCTAGGAGTGTCGGAGACCAGCTCCTTCGCCGAGATCAAAGCGTCGTTTCACAAATTAGCGAAAGAGACTCACCCGGACCTTGCTGAGTCAAGGAACGATTCCGCTGAGTCTCGCCGATTCGTGCAAATCCTGGCTGCATATGAGATTCTTTCAGATTCTCGGAAGAGAACCCATTATGACATGTATTTGTTGTCCCAGAGAAGGCTCATGCAGAGGCATTCCCAACAGGGTTCAAAATTGCACATTTACAAATCCCATGCTAATACTTTCAAGGAGATGGAAGTTGTTGAATGGTTGAAGTGGTACAGATTAACTATAAATGATATTTTGTCAGAGAAGAAGGTGGCTGTTGGAACAGGCTACTTTGATGTGCTTGAGAGAGATTTCTATTCAGCTATTCATGCAGCATATTATGGTCCTGAAATTGATTCTATGCCTATGGAGCTTTTTCCTGACTGCTTTGAGGCTGAGGAAAGGTCCTCTCATGAAACTCCTGAGGTTTTGCACTTGGTTTCCGGCCGGGATCTTTTCGGGATGGTTTGCCTAGCTGAGAAGATTCCGGAGATATCATCTACGAAAAATGAGAAGTTAATTTCTTTCAGATCCTTAGATTCTGACCTGTGCCAATCTACGATGAAGAAATTTCACATCAATGCAGAAAGGCAAGAGGATTTTGGGACACATCGAATTCAAACTTCTAACATTTCAAATAGTGTATCGGATGCATATAGAGATCTAGAATTGCATGTCTCCGGCAGAGTGATTGCTACAGCAACCCGGGACCTACCTAGATGTTATTCTGGTGGGTTGCAGAAAGATGTTGAAGATCACATTCACGTTTTCCTTAATTCGGATGAAGATCCAAAATATATCAGTGGCGACTTTCCAGAACATTACTTGGCCAATGGTGCAGTTGGAAGCAGAATTCATTTGGGAACCATATCTGGAATTGGGAGCACTCCAGATGAAGGTTGTTGTTATGTCTACAACAGCAATGGTGACAAGACCCATGCAATCATGAAACATAGAACATTGCTGGTGAAGCATATGCACTGGTATGAAATCGGTGACAGAGTTTCACTTTGTGAGTGTAGATGCACTAGGGCACGTTTACCACCAAGCAAGTTTTGGCTATTTGAACCTCGCTCTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGTAAAGATAAGAAGGGTCATACAATACCATCACAAAGGTTGTGGGATGGCTTGGACAATGGCGAGCAAGCTGACAGAAGACTTCATCCAGCTATGTATTTGTTTGCTCTTGCATATCGGACACTCGATATTGAATATGCCAAAGCAAACAAGAAGACCTTCAGGCATGTTGTTGGAGCACAAATGTTCAAAATTCTTCATTGGTGTAGGAAACTTGTTTAA 1611 0.4364 MVYLAGYRTVIGFHHRSPISLISITQNGATITPYDVVFLCRCCRYHRFSSASESSWEEFPVENAYELLGVSETSSFAEIKASFHKLAKETHPDLAESRNDSAESRRFVQILAAYEILSDSRKRTHYDMYLLSQRRLMQRHSQQGSKLHIYKSHANTFKEMEVVEWLKWYRLTINDILSEKKVAVGTGYFDVLERDFYSAIHAAYYGPEIDSMPMELFPDCFEAEERSSHETPEVLHLVSGRDLFGMVCLAEKIPEISSTKNEKLISFRSLDSDLCQSTMKKFHINAERQEDFGTHRIQTSNISNSVSDAYRDLELHVSGRVIATATRDLPRCYSGGLQKDVEDHIHVFLNSDEDPKYISGDFPEHYLANGAVGSRIHLGTISGIGSTPDEGCCYVYNSNGDKTHAIMKHRTLLVKHMHWYEIGDRVSLCECRCTRARLPPSKFWLFEPRSGFHDIGGWYVETYGKDKKGHTIPSQRLWDGLDNGEQADRRLHPAMYLFALAYRTLDIEYAKANKKTFRHVVGAQMFKILHWCRKLV* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0627 536 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 34 535 - -
Amo05g0627 536 SUPERFAMILY Chaperone J-domain 62 135 IPR036869 -
Amo05g0627 536 CDD DnaJ 63 119 IPR001623 -
Amo05g0627 536 Gene3D DnaJ domain 54 152 IPR036869 -
Amo05g0627 536 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Amo05g0627 536 PRINTS DnaJ domain signature 102 122 IPR001623 -
Amo05g0627 536 PRINTS DnaJ domain signature 83 98 IPR001623 -
Amo05g0627 536 PRINTS DnaJ domain signature 65 83 IPR001623 -
Amo05g0627 536 ProSiteProfiles dnaJ domain profile. 63 130 IPR001623 -
Amo05g0627 536 SMART dnaj_3 62 122 IPR001623 -
Amo05g0627 536 Pfam DnaJ domain 63 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0627 Amo-Chr5 7394796 7400470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0627 65 127 C2H2 Transcription Factor Family AT1G74250 39.394 6.21e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0627 - - gmx:100805332 844.728