Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0620 ATGTCGAAGGCGCGCGTCTACACTGATATAAATGTTCTTCGCCCCAAAGAGTACTGGGATTATGAGTCCCTCAACGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAATATAGCGAGGTATTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAAAAGATTAAAAGGGAGATTAAAATACTTCAGAACCTCTGTGGAGGCCCTAATATTGTCAAACTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTCAAGGCATTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATTGATCATGAATTAAGAAAACTTCGCTTAATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTATTCATTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTCTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAACGCGTATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCTCTTGTTGGAAGACACAGTCGCAAACCATGGTCTAAGTTTATCAATGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAAGACAGGCTAACAGCCAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTTAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 1002 0.3992 MSKARVYTDINVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0620 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Amo05g0620 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 333 IPR045216 GO:0004674|GO:0006468
Amo05g0620 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 333 - -
Amo05g0620 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0620 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Amo05g0620 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Amo05g0620 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Amo05g0620 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Amo05g0620 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0620 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g0620 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0620 Amo-Chr5 7362882 7367662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0620 32 319 Core Cell Cycle Gene Families AT1G76540 29.450 1.61e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Amo05g0620 Pkinase 6.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0620 K03097 - gmx:100819679 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0620 05 7362882 7367662 Amo01g1263 01 20166927 20171406 PCT
Amo05g0620 05 7362882 7367662 Amo11g1034 11 30374418 30379148 PCT
Amo01g1263 01 20166927 20171406 Amo05g0620 05 7362882 7367662 PCT
Amo11g1034 11 30374418 30379148 Amo05g0620 05 7362882 7367662 PCT