Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0587 ATGGGGAGCTCTCTCACTGCCACCTCTTTTTCTTTGTCAAGTCTAATGTGTGAAGAAGAAGGTGAAGCTTGCTTCTTTGAAGACAACTATGATGATGAAAATGAACACACTGGGATTGTTTTTCATGAGGAAGATGAAGAGGAATACATTGAGTATTTGTTCAGCCAAGAAACTGCTTTTGGATTCCACAATCATGATGATTGCTCCGCCGCCAGATTCTGGTTGAGGACTGCTCGTTTTGATGCCATTGATTGGATTTTCAATACACAGGCCAAACTTGGATTCAAAGTTCACACAGCTTATTTATCAGTCTCCTACTTTGATCGGTTTCTTTCAAAACGATCCATTGATGAATCAAAACCTTGGGCTATTCAATTATTATCGGTAGCATGCTTATCTCTTGCAGCAAAAATGGAAGAGCAAAATGTGCCTCCTCTCTCTGAATATCCAATAGTTGAATACAGATTTGAGAGCAAAGTGATTAAGAACATGGAGCTTCTGATTCTTGCTACCTTGGATTGGAAAATGGGATCATCATCACCAACTCCTTTTTCTTATCTCCATTACTTTCTCACAAAGTTCTGCCCTGGATCCAATTCACACACAATCATCACAAAAGCCACCCAACACATTGTAGCCATGGTCAAAGATGTTAATTTGATGGATCAACGGCCATCTATAATAGCCTCCGCTGCAATATTAGCAGCAGTTGATGCTACATTAACAAGAAAGACCATGGATCTTAGGATAAGAAAAATCTCATCTTGGGGCAATCTAGAAAGTGGAGATGTATTTTCCTGTTATAATCTTATACAGGAAAAGAGGAGGAACAAAGTTAAGACCCCTTGCTCGAATTTAATGTCAAACCAATCGAACTCCACGTGTGTTCTTGAGAATCAATCTGACACCACTTGTTCCGGAGTTAAGAGAAAACTTTCTTTTCAGGACACTGAGGAAACTGAAAACTACAAGAAGCTACATCGTCACTAG 990 0.3949 MGSSLTATSFSLSSLMCEEEGEACFFEDNYDDENEHTGIVFHEEDEEEYIEYLFSQETAFGFHNHDDCSAARFWLRTARFDAIDWIFNTQAKLGFKVHTAYLSVSYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQNVPPLSEYPIVEYRFESKVIKNMELLILATLDWKMGSSSPTPFSYLHYFLTKFCPGSNSHTIITKATQHIVAMVKDVNLMDQRPSIIASAAILAAVDATLTRKTMDLRIRKISSWGNLESGDVFSCYNLIQEKRRNKVKTPCSNLMSNQSNSTCVLENQSDTTCSGVKRKLSFQDTEETENYKKLHRH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0587 329 CDD CYCLIN 79 169 IPR013763 -
Amo05g0587 329 SMART cyclin_7 84 170 IPR013763 -
Amo05g0587 329 SMART Cyclin_C_2 181 315 IPR004367 -
Amo05g0587 329 Gene3D - 77 179 - -
Amo05g0587 329 PANTHER CYCLINS 49 311 IPR039361 -
Amo05g0587 329 Gene3D - 180 267 - -
Amo05g0587 329 Pfam Cyclin, N-terminal domain 51 176 IPR006671 -
Amo05g0587 329 Pfam Cyclin, C-terminal domain 181 288 IPR004367 -
Amo05g0587 329 SUPERFAMILY Cyclin-like 39 176 IPR036915 -
Amo05g0587 329 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Amo05g0587 329 PANTHER CYCLIN-D5-1 49 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0587 Amo-Chr5 6771102 6772510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0587 77 282 Core Cell Cycle Gene Families AT1G70210 39.151 4.53e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0587 K18811 - gmx:100798140 456.062