Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0585 ATGATGGAGAGCTACCTAAAAGAGAATTTTGATGTGAAGCCTAAGAATTCATCTGAAGAAGCACTTGAGAGATGGAGGAAGCTATGTGGGATGGTCAAGAACCCCAAAAGAAGGTTCCGTTTCACTGCAAATCTCTCCAAGAGACAAGAAGCAGATGCCATGCGTCTTGGCAACAAGGAGAAGCTGAAGGTGGCAGTTTTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGGTGCACAAGTGAAACCAAGTGATGAAAAAGTACCCGAGGAAGTTAAAGCAGCAGGTTTTGAAATCAGTGGTGATGAATTGGGGACTATTGTTGAAGGCCATGATGTGAAGAAGCTGAAATCTCATGGTGGGGTTGATGGCGTTGCAGAGAAGCTTTCTACATCAACCAGCAAGGGGCTTAGCAGTGATCCCGATTCACTGAGCAAGAGACAAGACATATATGGGATCAACAAATTCGCCGAAAGCGAAGCCAAGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATTGCAACAGAAGGTTGGCCAAAGGGAGCGCATGACGGTCTTGGCATTGTTGCCAGCATACTACTGGTTGTGTTTGTGACAGCAACCAGTGATTACAGGCAGTCATTGCAATTCAAAGATTTGGACAAGGAGAAGAAGAAGATTTCAGTTCAGGTAACAAGAGACGGTTGCAGGCAGAAGATGTCAATATATGAATTACTTGCTGGTGATATTGTGCATCTTTCAATTGGTGATCAAGTACCTGCTGATGGACTATTTCTCTCTGGATTCTCTGTGTTGATTGATGAATCAAGCTTGACAGGGGAGAGTGAACCGGTTATGGTGAACTCTGAGTATCCATTTCTTCTTTCTGGAACCAAGGTTCAAGATGGATCTTGCAAGATGTTGGTTACCACTGTGGGAATGAGGACTCAATGGGGGAAGTTGATGGCAACTCTGAGTGAAGGTGGAGATGATGAAACTCCATTACAGGTTAAATTGAATGGAGTTGCAACCATTATTGGCAAGATAGGCCTCTTCTTCGCCGTGGTTACATTCGCGGTTCTTGTGCAAGGACTAGTGAGCCGTAAGCTCCAAGAAGGGAGAATATGGAGCTGGAATGGAGATGATGCTTTGGAGATGCTGGAATTCTTCGCTGTCGCGGTTACCATAGTAGTTGTTGCTGTCCCAGAAGGGCTGCCACTGGCTGTGACATTGAGCCTTGCCTTCGCCATGAAGAAGATGATGAATGATAAGGCCCTTGTGAGGCATTTGGCCGCGTGCGAAACCATGGGATCTGCCACAACTATATGCAGTGACAAGACTGGAACTCTAACAACTAATCACATGACTGTTGTGAAAACATGCATTTGTATGAACACCAATGAAGTGAGTAACAATAAGGCTTCTGATTTGTGTTCTGAGCTTCCTGATTCTTCCATGAAACTGCTCCTTCAGTCAATATTCAACAACACTGGAGGAGAGGTTGTGGTTAACAAACATGGGAAGCGAGAGATCTTAGGGACACCAACAGAGACTGCAATCTTGGAGTTTGGCTTGTCACTTGGTGGAGATTTTCAAGCAGAGAAACAAGAATGCAATGTTGTTAAAGTTGAGCCTTTCAACTCCACCAAGAAGAAAATGAGCCTTGTGGTGGAGCTCCCTGGTGGTGGATTGCGTGCACACTGCAAAGGTGCTTCTGAGATCATCCTGGCCTCTTGTGACAAGGTGCTTAACTCTGCCGGCGAGGTTGTCCTGCTCAATGAAGAATCAAGTAACCATCTCAAGGCTACAATAGACCAGTTTGCTAATGAGGCACTCAGAACATTATGCCTTGCCTATAAAGAATTAGATAATGGATTCTCTTCTGAGGATCCAATTCCTGATTCTGGCTATACTTGTATAGGAATTGTTGGTATCAAGGATCCGGTTCGCCCCGGCGTTAAGGAATCTGTAGCAGTATGCCGCTCTGCTGGAATCACAGTGAGGATGGTTACAGGAGATAATATCAATACTGCCAAGGCTATAGCCAGGGAATGTGGGATCTTAACAGATGATGGCATAGCCATTGAAGGTCCAGAGTTTAGAGAGAAGAGTGAGGAAGAATTGCTTAAACTCATTCCCAAAATTCAGGTTATGGCTCGGTCGTCGCCTTTAGACAAACACACATTGGTGAAACACTTGCGTAACACGTTTGGGGAAGTTGTAGCTGTAACTGGCGATGGAACAAATGATGCTCCAGCACTTCATGAAGCTGACATTGGACTTGCTATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCTGATGTCATAATTCTAGATGACAACTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCTGTTTACATAAATATTCAAAAATTCGTGCAGTTTCAGTTAACGGTTAATGTGGTTGCATTGATAGTGAACTTCACCTCAGCATGTGTGACAGGAAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATCATGGATACACTGGGAGCACTAGCACTAGCAACTGAACCTCCGAATGATGATTTAATGAAGCGTTTGCCTGTTGGAAGGAAGGGCAATTTCATCAGCAATGTCATGTGGAGGAACATCTTGGGACAATCATTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGGGGGAAATCCATATTTTCGCTCGACGGCCCTGACTCGGATCTGGTCTTAAACACACTCATTTTCAACACATTTGTCTTTTGTCAGGTTTTCAATGAGATTAACTCACGTGAGATGGAGGAAATAGATGTTTTCAAAGGCATATTGAACAATCATGTTTTCGTGGGTGTCCTTACTGCTACTGTTTTCTTCCAAATCATAATAGTGGAGTACTTGGGAACCTTTGCAAACACAACACCTCTAACTCTGGTTCAATGGTTCTTCAGCTTGTTGGTTGGATTTTTAGGCATGCCAATCGCAGCTCGCTTGAAGAAGATCCGTGTTTGA 3054 0.442 MMESYLKENFDVKPKNSSEEALERWRKLCGMVKNPKRRFRFTANLSKRQEADAMRLGNKEKLKVAVLVSKAAFQFIQGAQVKPSDEKVPEEVKAAGFEISGDELGTIVEGHDVKKLKSHGGVDGVAEKLSTSTSKGLSSDPDSLSKRQDIYGINKFAESEAKSFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISVQVTRDGCRQKMSIYELLAGDIVHLSIGDQVPADGLFLSGFSVLIDESSLTGESEPVMVNSEYPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSRKLQEGRIWSWNGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNTNEVSNNKASDLCSELPDSSMKLLLQSIFNNTGGEVVVNKHGKREILGTPTETAILEFGLSLGGDFQAEKQECNVVKVEPFNSTKKKMSLVVELPGGGLRAHCKGASEIILASCDKVLNSAGEVVLLNEESSNHLKATIDQFANEALRTLCLAYKELDNGFSSEDPIPDSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEEELLKLIPKIQVMARSSPLDKHTLVKHLRNTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACVTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRLPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFSLDGPDSDLVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGILNNHVFVGVLTATVFFQIIIVEYLGTFANTTPLTLVQWFFSLLVGFLGMPIAARLKKIRV* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0585 1017 PANTHER CALCIUM-TRANSPORTING ATPASE 10 1015 - -
Amo05g0585 1017 SUPERFAMILY HAD-like 453 861 IPR036412 -
Amo05g0585 1017 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 CDD P-type_ATPase_Ca_PMCA-like 144 889 - -
Amo05g0585 1017 Gene3D - 170 1006 - -
Amo05g0585 1017 SFLD p-type atpase 437 808 IPR044492 -
Amo05g0585 1017 Pfam E1-E2 ATPase 238 433 - -
Amo05g0585 1017 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 461 665 IPR023299 GO:0000166
Amo05g0585 1017 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo05g0585 1017 Pfam Cation transporter/ATPase, N-terminus 119 187 IPR004014 -
Amo05g0585 1017 SFLD Haloacid Dehalogenase 437 808 - -
Amo05g0585 1017 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
Amo05g0585 1017 Gene3D - 17 77 - -
Amo05g0585 1017 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Amo05g0585 1017 Gene3D - 452 801 IPR023214 -
Amo05g0585 1017 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1015 IPR023298 -
Amo05g0585 1017 Pfam Cation transport ATPase (P-type) 516 594 - -
Amo05g0585 1017 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 395 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 552 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 726 843 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo05g0585 1017 SMART Cation_ATPase_N_a_2 118 192 IPR004014 -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 286 300 - -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Amo05g0585 1017 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Amo05g0585 1017 Gene3D - 465 660 IPR023299 GO:0000166
Amo05g0585 1017 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Amo05g0585 1017 PANTHER CATION TRANSPORTING ATPASE 10 1015 - -
Amo05g0585 1017 Gene3D - 141 338 - -
Amo05g0585 1017 SUPERFAMILY Calcium ATPase, transduction domain A 240 335 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0585 Amo-Chr5 6757727 6763421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0585 2 1017 Primary Pumps ATPases AT4G37640 82.203 0.0 1712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0585 K01537 - gmx:547567 1744.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0585 05 6757727 6763421 Amo01g1312 01 21797670 21804325 PCT
Amo01g1312 01 21797670 21804325 Amo05g0585 05 6757727 6763421 PCT