Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0580 ATGGGGAAGAAGCAGCATAGCAAGGATAGGATGTTCATCACCAAAACGGAGTGGGCCACCGAATGGGGTGGTGCCAAATCCAAAGAGATTCGCACCCCCTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACTCCGTTTGAATATCCGGTGTGCACAGCTGATGGGAGTGTTTTTGATGTTATGAACATCACCCCGTATATTGTTAAATATGGGAAACACCCCGTCACTGGAGCTCCCCTCAAGCAGGAAGATCTCATTCCACTAACTTTCCACAAGAATTCTGAAGGAGAATATCAATGTCCTGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTCGCAGTGAAGACTACAGGAAATGTGTTTTGCTATGAGGCTGTTAAAGAATTAAACATCAAAACAAAAAACTGGAAAGAGCTGCTCACTGATGAGCCATTCACGAAGGATGATCTTATAACTATTCAGAATCCTAATGCACTTGACAAGAAGGTTCTCCTGGATTTTGATCATGTAAAAAATAGTTTGAAAATTGATGACGAAGAAATACAGAAAATGAGATCAGATCCAACCTATAACATAAATGTGTCGGGCGATGTCAAGCAAATGCTTCTAGAGCTTGGAACTGAGAAAGGAAAGGAAACTGCAATGCATGGGGGAGGTGGTGGCAAGGCACAACAAGAAAGAGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGATCCCGTGTTAAAGAAGATTCCAAATCAGATCAAAATGGAGAGACTAAAGCTCCTCAGGCTTTTAGTATTGTAGATGCTGCATCTGCTGCTGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCTTCTAGTGATAAAACAGCTGCTAGAATAGCTATGCACATGGCTGGTGATAGGCAGGCAGTGAATGCAAAGCTGGTGAAAAGCCGTTACACTACTGGAGCTGCTTCCCGGTCATTCACTTCAACATCATTTGATCCGGTTACCAAAAATGACTTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAAGGATATGTACAACTGCATACAACACACGGAGATTTGAACATTGAGCTGCACTGTGATATAACACCAAGGACATGTGAGAACTTTATCACTCTTTGTGAACGTGGATATTACAATGGAGTTGCTTTTCATCGAAACATTCGGAATTTTATGATACAAGGCGGTGATCCTACTGGTACTGGAAAAGGTGGTGAATCAATATGGGGACAGCCTTTTAAAGACGAGCTTAACTCTAAATTAGTTCATTCTGGAAGAGGTGTGGTTAGCATGGCAAATAGTGGCCCACACACGAATGGTTCCCAGTTTTTCATCTTGTACAAGTCCGCAAAACATTTAAACTTTAAACACACAGTATTTGGAGCAGTAGTTGGTGGCTTGACTACATTAGCAGCAATGGAAAAGGTTCCCGTTGATGATAATGATCGGCCCCTGGAAGAAATCAAGATAACGAGTGTCACAATTTTTGTGAATCCTTATACAGAACCAGATGAGGAAGATGAGCAGGATAAAGAAAAAGAGAAGATCGAGGATGAAGATAATAGTAAGGTGGGATCATGGTATAGCAATCCTGGAGCTGGAACATTAGAATCTGGAGGTACGGTTGGTGGTGGTGTTGGCAAGTACTTAAAAGCCAGAACTGGTCAACAGCCTGAGTCAACAACCAGTACAGCCGTTGTAGGCAAGAAAAGAAAAGCCGGAGCTGCCACTGGTGAATTTAAAGATTTTTCTGCATGGTAA 1779 0.4216 MGKKQHSKDRMFITKTEWATEWGGAKSKEIRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYIVKYGKHPVTGAPLKQEDLIPLTFHKNSEGEYQCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDKKVLLDFDHVKNSLKIDDEEIQKMRSDPTYNINVSGDVKQMLLELGTEKGKETAMHGGGGGKAQQERAAALAAILAARSRVKEDSKSDQNGETKAPQAFSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHMAGDRQAVNAKLVKSRYTTGAASRSFTSTSFDPVTKNDFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGKGGESIWGQPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAKHLNFKHTVFGAVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTIFVNPYTEPDEEDEQDKEKEKIEDEDNSKVGSWYSNPGAGTLESGGTVGGGVGKYLKARTGQQPESTTSTAVVGKKRKAGAATGEFKDFSAW* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0580 592 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Amo05g0580 592 MobiDBLite consensus disorder prediction 505 592 - -
Amo05g0580 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Amo05g0580 592 Gene3D - 331 515 IPR029000 -
Amo05g0580 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Amo05g0580 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 SUPERFAMILY Cyclophilin-like 350 511 IPR029000 -
Amo05g0580 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Amo05g0580 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Amo05g0580 592 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Amo05g0580 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Amo05g0580 592 CDD cyclophilin_RING 350 507 - -
Amo05g0580 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Amo05g0580 592 SUPERFAMILY RING/U-box 37 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0580 Amo-Chr5 6701165 6706589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0580 1 592 U-box Gene Family AT5G67530 76.246 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0580 K10598 - gmx:100819923 996.882