Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0578 ATGGATACATTGTTTAGAGTAGTGAGTTTTGAACAATACCAACAACAGCAACAAGTTGAGTTAGATCAGTCCCTCAACTCCACCACCACTACCACTACTTCCAGCAGCTCTAGATCCTCCCGACACAACTATCACCACTACCAACAACAACAACAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTCTCCTCGTCTTCTTCCAAGCACCACTACTATCCCTATCACTCTCAATCCCATCCCCACACTTCCACTCCTCCCGCCACCATCCTCACGCCCAACGACTTCTCCCACTCCTTCGACTTCAACCTCCAATTCTCATCAAACACCAAGTGGGCCACCGACATCCTCCTCGACGCCGCCCGTGCTCTTGCCGACAAGAACACCGCCCGTCTCCAGCACCTCATGTGGATGCTCAACGAGCTCAGCTCCCCTTACGGCGACACCGAACAGAAGCTCGCCGCCTACTTCCTTCAAGCGCTCTTCAGCCGCATGACGCATGCCGGTGATCGAACCTTCCGAACCTTAACCTCCGCCTCCGATAAGACCTGCTCCTTCGAATCAACCAGAAAGACGGTGCTCAAGTTCCAAGAGGTGTCTCCGTGGACGACCTTCGGACACGTGGCAGCCAATGGCGCAATCTTGGAAGCTTTGGAAGGTGAAACAAAGTTGCACATAGTTGATATCAGCAACACCTATTGCACTCAATGGCCAACGCTATTTGAGGCCTTGGCCACTCGCTCCGACGACACCCCGCACCTCAGGCTCACAACCGTCGTCGTAACAACTGCTCACGGCGGATCTGTCCCGGCGGCGCAGAGGGTCATGAAGGAGATAGGTGCCAGGATGGAGAAGTTCGCCAGGCTCATGGGAGTTCCGTTCAAGTTCAACGTCGTTCACCATTCCGGCGATCTCTCCCAGTTCGATTTCGGGGAATTGGACATCAGGGACGACGAGGCGCTGGCCGTTAACTGCGTCAACTCGTTGCACTCGATCGCCGCGGTTGGGAACCGCCGCGACGCGGTGATATCGTCGCTGAGAAGGCTTCAGCCCAGGATCGTGACGGTGGTGGAGGAAGAAGCCGATTTGGACGTTGGTTTGGAAGGATTCGAATTCGTGAAAGGGTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTTGAGGCGCTGGAGGAGAGTTTTCCGAGGACGAGTAACGAGAGGCTGATGCTGGAGAGGGCGGCGGGGAGGGCGATGGTGGACTTGGTCGCGTGCTCGGCGGAGGAATCGTCGGAGAGGAGGGAGACGGCGGCGAGATGGTCGCAGAGGATGCATGGATCGGGGTTCAATACGGCGTCATTTAGCGAGGAAGTGTGCGATGACGTTAGGGCGCTGCTGAGGAGGTACAAGGAAGGGTGGTCAATGGTACAGTGCTCGGATCACGGCGGAATGATGCTGTGGTGGAAGGAGCAGGCGGTGGTGTGGGCCAGTGCATGGAGGCCCAGCTTCACGTAG 1503 0.5569 MDTLFRVVSFEQYQQQQQVELDQSLNSTTTTTTSSSSRSSRHNYHHYQQQQQDEECFNFFMDEEDLSSSSSKHHYYPYHSQSHPHTSTPPATILTPNDFSHSFDFNLQFSSNTKWATDILLDAARALADKNTARLQHLMWMLNELSSPYGDTEQKLAAYFLQALFSRMTHAGDRTFRTLTSASDKTCSFESTRKTVLKFQEVSPWTTFGHVAANGAILEALEGETKLHIVDISNTYCTQWPTLFEALATRSDDTPHLRLTTVVVTTAHGGSVPAAQRVMKEIGARMEKFARLMGVPFKFNVVHHSGDLSQFDFGELDIRDDEALAVNCVNSLHSIAAVGNRRDAVISSLRRLQPRIVTVVEEEADLDVGLEGFEFVKGFQECLRWFRVYFEALEESFPRTSNERLMLERAAGRAMVDLVACSAEESSERRETAARWSQRMHGSGFNTASFSEEVCDDVRALLRRYKEGWSMVQCSDHGGMMLWWKEQAVVWASAWRPSFT* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0578 500 Pfam GRAS domain family 118 496 IPR005202 -
Amo05g0578 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 496 IPR005202 -
Amo05g0578 500 ProSiteProfiles GRAS family profile. 107 496 IPR005202 -
Amo05g0578 500 PANTHER PROTEIN SHORT-ROOT 1 496 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Amo05g0578 500 MobiDBLite consensus disorder prediction 20 48 - -
Amo05g0578 500 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0578 Amo-Chr5 6691327 6694131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0578 1 498 GRAS Transcription Factor Family AT4G37650 62.639 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g0578 GRAS 1.6e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0578 - - gmx:100820459 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0578 05 6691327 6694131 Amo01g1323 01 22001887 22003924 PCT
Amo05g0578 05 6691327 6694131 Amo11g0978 11 28254565 28256602 PCT
Amo01g1323 01 22001887 22003924 Amo05g0578 05 6691327 6694131 PCT
Amo11g0978 11 28254565 28256602 Amo05g0578 05 6691327 6694131 PCT