Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0573 ATGGGTGCGCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTCAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACAATACTTACAGACCCAGAGTTTAGTGCCATTCTGCGCATGCGATCAAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAAGCAAAGCTTGCCCTAAAAAAGAACCTACCAATTCCCAAAATTGACTGTAACCACATGGCCATAAGTACTGTAGTTCAACGGGATGAAGTTGCTGATTATAAGCCTCTGGCAATTTCTGGCGGAGCATCACAATCTGCTAATTCAAAAGAACACATATCAAGCAATATGCGTTTTGACAGTGGCAGGTTGGATACTCTCATACTAGAGTCCATTATCAAGTTAAAAGAGCCGAAAGGTTCTGACCGGGCTGCCATTGCTGCTTACATAGAGGATCAATACTCATGTCCTCCGAACCTCAGAAAGTTACTGTCAGCAAAACTGAAGCATATGGTAGCAAGTGGAAAGTTAATGAAGGTAAAGCATAAGTACAGAATTACAGGAAATTCAACAATCTCTGAGAAGAGAAGAGGCTCTTCCTTGTTACTTTTGGAAGGAAGGCCAAAAGATTCCCCCAAATCAGAGAAGACTGATGTCAGCCTCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAAGGTGTGACAGCTCAAGAGGCAGCGGCTGCAGCTGCAAAAGCAGTTGCAGAAGCTGAAGTTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCGGAAGCAGAGGCTGCACGGGTATTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAAGCGCTTCATATCTGA 906 0.447 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPIPKIDCNHMAISTVVQRDEVADYKPLAISGGASQSANSKEHISSNMRFDSGRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYSCPPNLRKLLSAKLKHMVASGKLMKVKHKYRITGNSTISEKRRGSSLLLLEGRPKDSPKSEKTDVSLLSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEVAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0573 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 126 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g0573 301 SMART h15plus2 124 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g0573 301 CDD SANT_TRF 6 57 - -
Amo05g0573 301 Gene3D - 126 206 IPR036388 -
Amo05g0573 301 PANTHER SINGLE MYB HISTONE 4 1 301 IPR044597 GO:0003691
Amo05g0573 301 Coils Coil 249 283 - -
Amo05g0573 301 SUPERFAMILY "Winged helix" DNA-binding domain 129 203 IPR036390 -
Amo05g0573 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Amo05g0573 301 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Amo05g0573 301 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Amo05g0573 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Amo05g0573 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Amo05g0573 301 SMART sant 4 59 IPR001005 -
Amo05g0573 301 Gene3D - 2 59 - -
Amo05g0573 301 Pfam linker histone H1 and H5 family 131 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0573 Amo-Chr5 6648963 6653708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0573 1 297 Single Myb Histone (SMH) Gene Family AT5G67580 55.482 2.53e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g0573 Linker_histone 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0573 K09422 - gmx:100796539 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0573 05 6648963 6653708 Amo01g1329 01 22145198 22148980 PCT
Amo05g0573 05 6648963 6653708 Amo11g0969 11 28013070 28017270 PCT
Amo01g1329 01 22145198 22148980 Amo05g0573 05 6648963 6653708 PCT
Amo11g0969 11 28013070 28017270 Amo05g0573 05 6648963 6653708 PCT