Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0550 ATGCCGATGTTTCAGCCTTCCAAGAGGGACATGGTAGGTGGGTACGAGGGTGGAGGGGACGGGCAGATTCTAGATCTGGACACTGCCGTGAAGGACGGTGTGTTGGGGGGAGGCGTTGGCGTTGGCGTTGGCGTTGTGGGAGGCATGGCATGCGAGAAATTGGATCTGGGGAAGATGATTGAGGAGCTGGACTTGTCGGAGGTACCAAGCGTGTTCATATGCCCAATCTCTCTYGAAGCAATGCAAGACCCCGTGACACTCTGCACCGGKCAAACTTACGAGCGGTCCAACATCCTCAAATGGTTCAACCTGGGTCACTTGACCTGCCCCACTACGATGCAGGAGCTTTGGGATGATTCCGTTACCCCCAACACCACCCTCTACCGCCTCATATACACGTGGTTCTCTCAGAAGTACCTTCTCATGAAGAAGAGGTCGGAGGATGTTCAGGGTAGGGCTTCCGAGCTTCTTGACACGCTCAAGAAGGTCAAGGGTCAGGCTCGKGTCATGGCTCTCAAGGAGCTTCACCAGGTTGTTGCTGCTCACGCCACTGCCCGCAAGACGCTTCTCGATGAAGGTGGTGTCTCTMTAATGTCTTCTTTGCTTGGACCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGTATTCTTGTTTGCTTGACTCTTGATTCCGATTCCAAGAAGAATCTTATGCAGCCTGCCAAGGTTTCTTTGATGGTGGATATCCTCAACGAGGGCTCTATTGAGACCAAGATTAATTGTACTAGGTTGATTGAGTCATTGATTGACGACAAGGATCTTAGGTCCGAGCTTATCTCCAGCCATAGCTTGTTGGTTGGGTTGATGAGGCTTGTAAAGGATAAGAGGCACACCAATGGAATCTGCCCTGGCTTGAGCCTTTTAAGAGCAATTTGCTCCCACAAAGAGATTCGCCATTTGCTTGTAAGCATCGGTGCTGTTTCGCAATTGGTCGAATTGTTGTCTGCTTTGGAGCCTGATTGTTTGGAATTGGCACTTTCTATCTTGGATTCCTTGGCATCTATACCCGAAGGCAGGCTTGCTTTGAAGAATTGTTCTAATACCATACCAATCATGGTCAAATTGTTGATGAGGATCTCGGAGAATTGCACGCAGTATGCGTTGTCCATCTTGTGGTCTGTCTGCAAGCTTGCACCGGAGGAGTGCTCGTCCGTTGCCGTGGACGCAGGGCTTGCTGCCAAACTCCTCCTTGTGATTCAGAGTGGTTGCAATCCTCTATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGCAGTTTGAATTATTCGGATACAATCTTRATTTCCAAGTGCAAGCTTACAAGAACCATCCTATAA 1359 0.4915 MPMFQPSKRDMVGGYEGGGDGQILDLDTAVKDGVLGGGVGVGVGVVGGMACEKLDLGKMIEELDLSEVPSVFICPISLEAMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSVTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLDTLKKVKGQARVMALKELHQVVAAHATARKTLLDEGGVSXMSSLLGPFTSHAVGSEVIGILVCLTLDSDSKKNLMQPAKVSLMVDILNEGSIETKINCTRLIESLIDDKDLRSELISSHSLLVGLMRLVKDKRHTNGICPGLSLLRAICSHKEIRHLLVSIGAVSQLVELLSALEPDCLELALSILDSLASIPEGRLALKNCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSVAVDAGLAAKLLLVIQSGCNPLLKQQSAELLKLCSLNYSDTILISKCKLTRTIL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0550 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Amo05g0550 452 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 449 - -
Amo05g0550 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 141 IPR013083 -
Amo05g0550 452 PANTHER WDSAM1 PROTEIN 42 449 IPR045185 GO:0061630
Amo05g0550 452 SUPERFAMILY ARM repeat 238 438 IPR016024 -
Amo05g0550 452 Gene3D - 304 433 IPR011989 -
Amo05g0550 452 Gene3D - 142 303 IPR011989 -
Amo05g0550 452 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Amo05g0550 452 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Amo05g0550 452 CDD RING-Ubox_PUB 72 114 IPR045210 -
Amo05g0550 452 SUPERFAMILY RING/U-box 62 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0550 Amo-Chr5 6380819 6383629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0550 1 451 U-box Gene Family AT3G49810 75.166 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0550 - - adu:107487639 843.188