Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0542 ATGCTCTCTGCTATCTCTGCCTCCGACGCTTTGATCGGAAACCCCTTTGCCTCTTCAGCGTTCGACGGCGGTTTACCGTCGTGGGACTGCACTGACTTTATCTTTGCCGCCATTAACACTTCGAGCTCCGGTTCAGATGATTCCAACGAAAACAATGCAAAAGAAAAACCCGGTTCGGAGGCCGTTATGGACGAGCGGAAACGTCGGAGAAAGATATCGAACCGGGAATCGGCCAGGAGGTCACGGATGCGGAAGCAGAGACACCTAGAGAACCTGCGGAACCAGTTGAAGGCGTCTAGAGTGGAAAACCGGGAACTGAACAACCGGTTGCAGTTGATGGTTCATCATTTTAACTGCGTGCGAACCGAAAACGATTGGTTACGGTCTGAGAGAACCCTGTTACGCCAGAAACTGTCGTACATGACTCAAATTTTGTTATTCCAACAACTTCGACAACAACCCTTCTCTTCCTCTGCATGGCCATGCAATAATGTCACGCCGCAATAA 507 0.501 MLSAISASDALIGNPFASSAFDGGLPSWDCTDFIFAAINTSSSGSDDSNENNAKEKPGSEAVMDERKRRRKISNRESARRSRMRKQRHLENLRNQLKASRVENRELNNRLQLMVHHFNCVRTENDWLRSERTLLRQKLSYMTQILLFQQLRQQPFSSSAWPCNNVTPQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0542 168 SUPERFAMILY Leucine zipper domain 66 116 IPR046347 GO:0003700|GO:0006355
Amo05g0542 168 MobiDBLite consensus disorder prediction 72 87 - -
Amo05g0542 168 Gene3D - 64 144 - -
Amo05g0542 168 PANTHER BNACNNG60880D PROTEIN 40 166 - -
Amo05g0542 168 CDD bZIP_plant_GBF1 67 118 IPR045314 GO:0003700|GO:0006355
Amo05g0542 168 Coils Coil 75 109 - -
Amo05g0542 168 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Amo05g0542 168 MobiDBLite consensus disorder prediction 41 89 - -
Amo05g0542 168 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 113 IPR004827 GO:0003700|GO:0006355
Amo05g0542 168 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Amo05g0542 168 PANTHER BZIP TRANSCRIPTION FACTOR 44 40 166 - -
Amo05g0542 168 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0542 Amo-Chr5 6279654 6280463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0542 45 154 bZIP Transcription Factor Family AT2G22850 45.455 7.75e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo05g0542 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0542 - - lang:109332688 176.792