Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0541 ATGAATCATGCCTCAACTCAAATGATGAAGACCCTCCTAGATGCTGACACCTTTGTTAACTTGAACAATCAAAATAATATAGTAGGTGTTCCTTCACACCCTTCTTCTTCTGCTTCTGTAGAAGCAGTTCTACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGGTGAAAATGTTGGATGGTATCCACCACTCCCTGTCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGACATAGAAGCTCTCAGCAGAACAAAACAACAAGCACCAAAACTGGAGGATTTCTTTGGTGGGCAAAGCCAAGAATGCAACAACGCCAGAGAAGCACTGCCTCTGAGCTATAACATGTTTCACAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCAGAACCAGCAGCATGATGTTAACCAGCAACACTCATCATATTATTCTTCTGCATCAAGAAACAACAACAACCATCATCAGGTGATGCTACAAGGATACAATATGGTTAAGGAGGAAGTGCCTGGTATCCACCATGCAATGGAGGCAAAGCTGGTTGTTCCTTTGGAGGATAATAGAGGTGAATCGCTGTCCATTGGATCGGTGGCGTTCGGGGATTTACAGTCACTGAGGTTGTCCACGAGTCCAAGCTCCCAATCAAGTTGTGTCACAACCTCACAACAAGCATCACATGCTGTCATGAGCACTACAAAGAAGAGGGTGCATGATGAAATGGTGGAGCAGAACCAGAAGCAAATTGCTCATAGAAAATCCATTGATACCTTTGGCCAGAGAACATCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATACAAACTTCCCATTGGAAAATTATCAAAATGAACTTGTGCAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGCAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCTGCTGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAGGAGAAAAAGAGAGGTCATTGTTAATAATAACCATAAACCATCTACATATGATGAAGAATCGATTCTAATGCACAAGAGCTGCAAAAACCCTCAGATCATGATGATTAATCATCCACCAACAATGGCATTAGAGGAGGAATCAAGTAGTAAGATTGGAACACATATTTCAAATGAAGATAAGACAGGTTTGCCAATTCTCTATGGAAGACCTTCAACAACAGCAGCCTCTACTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACCACCATCACATCTGAGACCTAATAAGCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCATGGACAGACGCATAA 1692 0.4214 MNHASTQMMKTLLDADTFVNLNNQNNIVGVPSHPSSSASVEAVLPPSFCCYYGVEGENVGWYPPLPVLPLKSDGSLFDIEALSRTKQQAPKLEDFFGGQSQECNNAREALPLSYNMFHNPNYLNHVQENINLLQNQQHDVNQQHSSYYSSASRNNNNHHQVMLQGYNMVKEEVPGIHHAMEAKLVVPLEDNRGESLSIGSVAFGDLQSLRLSTSPSSQSSCVTTSQQASHAVMSTTKKRVHDEMVEQNQKQIAHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQARRKREVIVNNNHKPSTYDEESILMHKSCKNPQIMMINHPPTMALEEESSSKIGTHISNEDKTGLPILYGRPSTTAASTRLLATIPTGWDQPPSHLRPNKLSLPQMPVFAAWTDA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0541 563 Gene3D AP2/ERF domain 369 430 IPR036955 GO:0003700|GO:0006355
Amo05g0541 563 Gene3D AP2/ERF domain 266 335 IPR036955 GO:0003700|GO:0006355
Amo05g0541 563 CDD AP2 368 429 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 CDD AP2 266 333 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 ProSiteProfiles AP2/ERF domain profile. 369 428 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 PRINTS Ethylene responsive element binding protein signature 410 430 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 Coils Coil 123 143 - -
Amo05g0541 563 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 SUPERFAMILY DNA-binding domain 368 428 IPR016177 GO:0003677
Amo05g0541 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 561 - -
Amo05g0541 563 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 SMART rav1_2 369 434 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 46 561 - -
Amo05g0541 563 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 Pfam AP2 domain 370 420 IPR001471 GO:0003700|GO:0006355
Amo05g0541 563 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0541 Amo-Chr5 6269454 6272483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0541 48 563 AP2-EREBP Transcription Factor Family AT4G37750 49.642 5.36e-158 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Amo05g0541 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0541 K09285 - gmx:100792451 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0541 05 6269454 6272483 Amo01g1348 01 23047979 23052832 PCT
Amo01g1348 01 23047979 23052832 Amo05g0541 05 6269454 6272483 PCT